Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C9J79_RS05770 Genome accession   NZ_CP028185
Coordinates   1088946..1089719 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1083946..1094719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS05755 (C9J79_05755) - 1084795..1086729 (-) 1935 WP_057044147.1 ribonuclease R family protein -
  C9J79_RS05760 (C9J79_05760) ilvC 1086848..1087870 (+) 1023 WP_057044146.1 ketol-acid reductoisomerase -
  C9J79_RS05765 (C9J79_05765) - 1087874..1088956 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  C9J79_RS05770 (C9J79_05770) dprA 1088946..1089719 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  C9J79_RS05775 (C9J79_05775) dprB 1089716..1090099 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  C9J79_RS05780 (C9J79_05780) - 1090128..1090967 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  C9J79_RS05785 (C9J79_05785) msrA 1091143..1091640 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C9J79_RS05790 (C9J79_05790) ppa 1091682..1092200 (-) 519 WP_002852138.1 inorganic diphosphatase -
  C9J79_RS05795 (C9J79_05795) adk 1092210..1092788 (-) 579 WP_032590860.1 adenylate kinase -
  C9J79_RS05800 (C9J79_05800) aspS 1092785..1094536 (-) 1752 WP_070318352.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=239052 C9J79_RS05770 WP_002859984.1 1088946..1089719(+) (dprA) [Campylobacter jejuni strain CFSAN054107]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=239052 C9J79_RS05770 WP_002859984.1 1088946..1089719(+) (dprA) [Campylobacter jejuni strain CFSAN054107]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459