Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   C9J79_RS05775 Genome accession   NZ_CP028185
Coordinates   1089716..1090099 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain CFSAN054107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084716..1095099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS05755 (C9J79_05755) - 1084795..1086729 (-) 1935 WP_057044147.1 ribonuclease R family protein -
  C9J79_RS05760 (C9J79_05760) ilvC 1086848..1087870 (+) 1023 WP_057044146.1 ketol-acid reductoisomerase -
  C9J79_RS05765 (C9J79_05765) - 1087874..1088956 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  C9J79_RS05770 (C9J79_05770) dprA 1088946..1089719 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  C9J79_RS05775 (C9J79_05775) dprB 1089716..1090099 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  C9J79_RS05780 (C9J79_05780) - 1090128..1090967 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  C9J79_RS05785 (C9J79_05785) msrA 1091143..1091640 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C9J79_RS05790 (C9J79_05790) ppa 1091682..1092200 (-) 519 WP_002852138.1 inorganic diphosphatase -
  C9J79_RS05795 (C9J79_05795) adk 1092210..1092788 (-) 579 WP_032590860.1 adenylate kinase -
  C9J79_RS05800 (C9J79_05800) aspS 1092785..1094536 (-) 1752 WP_070318352.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=239053 C9J79_RS05775 WP_002852281.1 1089716..1090099(+) (dprB) [Campylobacter jejuni strain CFSAN054107]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=239053 C9J79_RS05775 WP_002852281.1 1089716..1090099(+) (dprB) [Campylobacter jejuni strain CFSAN054107]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449