Detailed information    

insolico Bioinformatically predicted

Overview


Name   lpp1976   Type   Machinery gene
Locus tag   LPL_RS09915 Genome accession   NC_006369
Coordinates   2213259..2213816 (-) Length   185 a.a.
NCBI ID   WP_011215959.1    Uniprot ID   Q5WV46
Organism   Legionella pneumophila str. Lens     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2208259..2218816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS09890 (lpl1966) - 2208412..2208987 (-) 576 WP_230457391.1 hypothetical protein -
  LPL_RS09895 (lpl1967) - 2209254..2209904 (-) 651 WP_011215956.1 lysoplasmalogenase -
  LPL_RS09900 (lpl1968) - 2209984..2210484 (-) 501 WP_011214243.1 hypothetical protein -
  LPL_RS09905 (lpl1969) - 2210975..2211835 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  LPL_RS09910 (lpl1970) - 2211959..2213149 (-) 1191 WP_011215958.1 murein transglycosylase A -
  LPL_RS09915 (lpl1971) lpp1976 2213259..2213816 (-) 558 WP_011215959.1 hypothetical protein Machinery gene
  LPL_RS09920 (lpl1972) lpp1977 2213813..2214619 (-) 807 WP_011215960.1 PilW family protein Machinery gene
  LPL_RS09925 (lpl1973) lpp1978 2214558..2214872 (-) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPL_RS09930 (lpl1974) hisC 2215032..2216141 (+) 1110 WP_011215962.1 histidinol-phosphate transaminase -
  LPL_RS09935 (lpl1975) - 2216178..2216519 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPL_RS09940 (lpl1976) secF 2216709..2217626 (-) 918 WP_011215964.1 protein translocase subunit SecF -

Sequence


Protein


Download         Length: 185 a.a.        Molecular weight: 21619.06 Da        Isoelectric Point: 6.9395

>NTDB_id=23852 LPL_RS09915 WP_011215959.1 2213259..2213816(-) (lpp1976) [Legionella pneumophila str. Lens]
MKKTDSGFILLMTLCITFLMSLLVLASLQLIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=23852 LPL_RS09915 WP_011215959.1 2213259..2213816(-) (lpp1976) [Legionella pneumophila str. Lens]
ATGAAAAAAACTGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACTGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTGGCGCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAAGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
TAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCCATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5WV46

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

97.838

100

0.978

  lpp1976 Legionella pneumophila strain ERS1305867

96.757

100

0.968


Multiple sequence alignment