Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   LPL_RS09920 Genome accession   NC_006369
Coordinates   2213813..2214619 (-) Length   268 a.a.
NCBI ID   WP_011215960.1    Uniprot ID   -
Organism   Legionella pneumophila str. Lens     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208813..2219619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS09895 (lpl1967) - 2209254..2209904 (-) 651 WP_011215956.1 lysoplasmalogenase -
  LPL_RS09900 (lpl1968) - 2209984..2210484 (-) 501 WP_011214243.1 hypothetical protein -
  LPL_RS09905 (lpl1969) - 2210975..2211835 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  LPL_RS09910 (lpl1970) - 2211959..2213149 (-) 1191 WP_011215958.1 murein transglycosylase A -
  LPL_RS09915 (lpl1971) lpp1976 2213259..2213816 (-) 558 WP_011215959.1 hypothetical protein Machinery gene
  LPL_RS09920 (lpl1972) lpp1977 2213813..2214619 (-) 807 WP_011215960.1 PilW family protein Machinery gene
  LPL_RS09925 (lpl1973) lpp1978 2214558..2214872 (-) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPL_RS09930 (lpl1974) hisC 2215032..2216141 (+) 1110 WP_011215962.1 histidinol-phosphate transaminase -
  LPL_RS09935 (lpl1975) - 2216178..2216519 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPL_RS09940 (lpl1976) secF 2216709..2217626 (-) 918 WP_011215964.1 protein translocase subunit SecF -
  LPL_RS09945 (lpl1977) secD 2217639..2219495 (-) 1857 WP_011215965.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31266.30 Da        Isoelectric Point: 8.8641

>NTDB_id=23853 LPL_RS09920 WP_011215960.1 2213813..2214619(-) (lpp1977) [Legionella pneumophila str. Lens]
MLHGLKKASPLFAPMSWMLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKSQYLKAQEQLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYEEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=23853 LPL_RS09920 WP_011215960.1 2213813..2214619(-) (lpp1977) [Legionella pneumophila str. Lens]
ATGTTACATGGTTTAAAAAAAGCCAGTCCATTATTCGCTCCTATGAGCTGGATGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACCCAGTTTTATATAAGAA
GCAAGTCTCAATACCTAAAGGCACAAGAACAGTTAGAAATTAATTTTGATTTGTTGTGGATTGGCGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGTGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACATTAAAAAAACCACT
GCAGTTTCGATATGAAGAAATTGCTTATTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGTCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTGCGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

95.896

100

0.959
  lpp1977 Legionella pneumophila strain ERS1305867

95.896

100

0.959

Multiple sequence alignment