Detailed information NTG0238497

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CFN79_RS06035
• Genome accession: NZ_CP022344
• Coordinates: 1251477..1252793 (+)
• Length: 438 a.a.
• NCBI ID: WP_104945891.1
• Uniprot ID: -
• Organism: Chromobacterium vaccinii strain XC0014
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1246477..1257793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFN79_RS06020 (CFN79_05960)	-	1247020..1247478 (-)	459	WP_021478853.1	GNAT family N-acetyltransferase	-
CFN79_RS06025 (CFN79_05965)	parC	1247577..1249928 (+)	2352	WP_031296929.1	DNA topoisomerase IV subunit A	-
CFN79_RS06030 (CFN79_05970)	-	1249928..1251484 (+)	1557	WP_104945890.1	two-component system sensor histidine kinase NtrB	-
CFN79_RS06035 (CFN79_05975)	pilR	1251477..1252793 (+)	1317	WP_104945891.1	sigma-54-dependent transcriptional regulator	Regulator
CFN79_RS23315	-	1252887..1254260 (-)	1374	WP_158677471.1	hypothetical protein	-
CFN79_RS23320	-	1254326..1254484 (-)	159	WP_021478859.1	hypothetical protein	-
CFN79_RS06050 (CFN79_05990)	-	1254935..1256317 (-)	1383	WP_104945894.1	radical SAM/SPASM domain-containing protein	-
CFN79_RS23325	-	1256506..1256679 (-)	174	WP_021478861.1	hypothetical protein	-

Sequence

Protein

• Length: 438 a.a.
• Molecular weight: 47583.68 Da
• Isoelectric Point: 5.6454

>NTDB_id=238497 CFN79_RS06035 WP_104945891.1 1251477..1252793(+) (pilR) [Chromobacterium vaccinii strain XC0014]
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPACAGSVAEARAALDAGGFDLALTDMRLPDGEGLDVVNHIGEAGLDVPIA
VITAYGSADNAVRAMKAGAFDYLQKPVSLAQLRSLVKTALKVETPVAKAVAQQRLLGESPAIQEALRLADKLSRSQAAVY
IGGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPETLMESEFFGCRKGAFTGADADRDGFFQQAQGGTLFLDEVAELP
LAMQVKLLRAIQEKTVRKLGASQEEAADVRIICATHRDLAARVEAGQFRQDLYYRLNVLPLKMPPLRELRDDIPLFAERL
LQRFGGASAPQLSADARRALLDYAYPGNFRELENILERAVALAAGPSLSRADLQLTPCADYAPELGSGEPLQDYLDRVER
EAIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

Nucleotide

• Length: 1317 bp

>NTDB_id=238497 CFN79_RS06035 WP_104945891.1 1251477..1252793(+) (pilR) [Chromobacterium vaccinii strain XC0014]
ATGACTAAGACACTGCGCGTATTGATCGTCGACGACGAGCCGGACATCCGGGAGCTGCTGGAGCTGACCTTGCTGAAAAT
GGGCCTCGCGCCGGCATGCGCCGGCAGCGTCGCCGAAGCGCGCGCCGCGCTGGACGCCGGCGGCTTCGATCTGGCGCTGA
CCGATATGCGCCTGCCTGACGGCGAGGGCCTGGACGTGGTCAACCACATCGGCGAGGCTGGACTGGACGTGCCCATCGCC
GTGATCACCGCTTACGGCAGCGCCGACAACGCGGTGCGGGCGATGAAGGCCGGCGCGTTCGACTATTTGCAGAAGCCGGT
CAGCCTGGCGCAGCTGCGCAGTCTGGTGAAGACCGCGTTGAAGGTGGAAACGCCGGTCGCCAAGGCGGTTGCGCAGCAAA
GGCTGCTCGGCGAGTCGCCGGCGATCCAGGAGGCGCTGCGGCTGGCGGACAAGTTGTCGCGCAGCCAGGCGGCGGTGTAT
ATCGGCGGCGAGTCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGCTGGGCCCGCGCGCGGACAAGCCCTT
CGTCGCCGTCAACTGCGGCGCGATTCCGGAAACCTTGATGGAGAGCGAATTCTTCGGCTGCCGCAAGGGCGCGTTCACCG
GCGCCGACGCCGACCGTGACGGCTTCTTCCAGCAGGCCCAAGGCGGCACGCTGTTCTTGGACGAGGTAGCGGAACTGCCA
TTGGCGATGCAGGTGAAGCTGCTGCGCGCAATCCAGGAAAAGACGGTGCGCAAGCTGGGCGCCAGCCAGGAGGAGGCGGC
GGATGTCCGCATCATCTGCGCCACCCACCGCGACCTGGCGGCGAGGGTGGAGGCCGGGCAGTTCCGCCAGGACCTGTACT
ACCGCCTCAATGTGCTGCCGCTGAAAATGCCGCCGCTGCGCGAGTTGCGCGACGACATCCCCTTGTTCGCCGAGAGGCTG
CTGCAGCGTTTCGGCGGCGCGTCGGCGCCGCAGCTGTCCGCCGACGCGCGCCGCGCGCTGCTGGACTACGCCTACCCCGG
CAACTTCCGCGAACTGGAAAACATCCTGGAGCGGGCAGTGGCTTTGGCCGCCGGCCCTTCGCTGTCGCGCGCCGATCTGC
AGCTGACTCCCTGCGCCGACTATGCGCCGGAGCTCGGCAGCGGCGAGCCGCTGCAGGACTATCTGGATCGAGTCGAGCGA
GAAGCCATCGTCAAGGCGCTGGAAGGCACCCGCTACAACCGTACCCAGGCCGCGAAAAAACTGGGCGTCACCTTCCGCTC
ATTGCGCTACCGGATGGAGCGGCTGGGGGTAAAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (395-434)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.545	100	0.598
pilR	Acinetobacter baumannii strain A118	45.752	100	0.479
luxO	Vibrio cholerae strain A1552	40.796	91.781	0.374