Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   C5P47_RS04695 Genome accession   NZ_CP028140
Coordinates   909998..911068 (-) Length   356 a.a.
NCBI ID   WP_032464390.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS979     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904998..916068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5P47_RS04675 (C5P47_04655) citX 905583..906161 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  C5P47_RS04680 (C5P47_04660) - 906176..907570 (+) 1395 WP_023612467.1 oxaloacetate decarboxylase subunit alpha -
  C5P47_RS04685 (C5P47_04665) citC 907681..908733 (-) 1053 WP_110410795.1 [citrate (pro-3S)-lyase] ligase -
  C5P47_RS04690 (C5P47_04670) - 908822..909304 (-) 483 WP_063631903.1 PASTA domain-containing protein -
  C5P47_RS04695 (C5P47_04675) xerS 909998..911068 (-) 1071 WP_032464390.1 tyrosine recombinase XerS Machinery gene
  C5P47_RS04700 (C5P47_04680) - 911538..912236 (+) 699 WP_014635476.1 helix-turn-helix transcriptional regulator -
  C5P47_RS04705 (C5P47_04685) ffh 912371..913933 (-) 1563 WP_002993302.1 signal recognition particle protein -
  C5P47_RS04710 (C5P47_04690) - 913948..914280 (-) 333 WP_002989745.1 putative DNA-binding protein -
  C5P47_RS04715 (C5P47_04695) - 914378..915076 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=238337 C5P47_RS04695 WP_032464390.1 909998..911068(-) (xerS) [Streptococcus pyogenes strain NGAS979]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=238337 C5P47_RS04695 WP_032464390.1 909998..911068(-) (xerS) [Streptococcus pyogenes strain NGAS979]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGATTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment