Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CFN77_RS16840 Genome accession   NZ_CP022319
Coordinates   3258839..3260218 (-) Length   459 a.a.
NCBI ID   WP_152032909.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3253839..3265218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS16805 (CFN77_16970) flgL 3254022..3254933 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  CFN77_RS16810 (CFN77_16975) flgK 3254942..3256462 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  CFN77_RS16815 (CFN77_16980) - 3256478..3256960 (-) 483 WP_007499977.1 flagellar protein FlgN -
  CFN77_RS16820 (CFN77_16985) flgM 3256979..3257242 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  CFN77_RS16825 (CFN77_16990) - 3257322..3257741 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  CFN77_RS16830 (CFN77_16995) comFC 3257798..3258379 (-) 582 WP_414635072.1 ComF family protein Machinery gene
  CFN77_RS16835 (CFN77_17000) - 3258481..3258774 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  CFN77_RS16840 (CFN77_17005) comFA 3258839..3260218 (-) 1380 WP_152032909.1 DEAD/DEAH box helicase Machinery gene
  CFN77_RS16845 (CFN77_17010) - 3260338..3261180 (-) 843 WP_096881922.1 DegV family protein -
  CFN77_RS16850 (CFN77_17015) degU 3261392..3262081 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  CFN77_RS16855 (CFN77_17020) degS 3262146..3263321 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  CFN77_RS16860 (CFN77_17025) - 3263543..3264211 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52549.17 Da        Isoelectric Point: 9.9664

>NTDB_id=238336 CFN77_RS16840 WP_152032909.1 3258839..3260218(-) (comFA) [Bacillus altitudinis strain SGAir0031]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLIWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFSESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=238336 CFN77_RS16840 WP_152032909.1 3258839..3260218(-) (comFA) [Bacillus altitudinis strain SGAir0031]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTCCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCATTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTTGACGAAGTCGATGCATTTCCTTATTCAATTGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTATTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment