Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CFH90_RS14315 Genome accession   NZ_CP022298
Coordinates   2910012..2910410 (-) Length   132 a.a.
NCBI ID   WP_126037973.1    Uniprot ID   A0A3S9ANQ4
Organism   Acinetobacter johnsonii strain IC001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905012..2915410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS14285 (CFH90_14230) - 2905085..2905354 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  CFH90_RS14290 (CFH90_14235) rapZ 2905351..2906202 (-) 852 WP_004692298.1 RNase adapter RapZ -
  CFH90_RS14295 (CFH90_14240) panC 2906229..2907071 (-) 843 WP_126037972.1 pantoate--beta-alanine ligase -
  CFH90_RS14300 (CFH90_14245) panB 2907075..2907884 (-) 810 WP_004692301.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CFH90_RS14305 (CFH90_14250) folK 2907921..2908409 (-) 489 WP_004692303.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CFH90_RS14310 (CFH90_14255) pcnB 2908406..2909875 (-) 1470 WP_114836793.1 polynucleotide adenylyltransferase PcnB -
  CFH90_RS14315 (CFH90_14260) comEA 2910012..2910410 (-) 399 WP_126037973.1 ComEA family DNA-binding protein Machinery gene
  CFH90_RS14320 (CFH90_14265) mazG 2910429..2911190 (-) 762 WP_126037974.1 nucleoside triphosphate pyrophosphohydrolase -
  CFH90_RS14325 (CFH90_14270) - 2911309..2912076 (+) 768 WP_126037975.1 SDR family oxidoreductase -
  CFH90_RS14330 (CFH90_14275) - 2912116..2914422 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14713.19 Da        Isoelectric Point: 10.8498

>NTDB_id=238205 CFH90_RS14315 WP_126037973.1 2910012..2910410(-) (comEA) [Acinetobacter johnsonii strain IC001]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKTEQQAWDDRIQAPKSVKRVVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=238205 CFH90_RS14315 WP_126037973.1 2910012..2910410(-) (comEA) [Acinetobacter johnsonii strain IC001]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCGTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAACAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGTTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGTTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9ANQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.098

92.424

0.5
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492
  comEA Acinetobacter baylyi ADP1

45.794

81.061

0.371

Multiple sequence alignment