Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BG910_RS05450 Genome accession   NZ_CP022278
Coordinates   1102989..1103459 (-) Length   156 a.a.
NCBI ID   WP_089035780.1    Uniprot ID   A0A220S0X1
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097989..1108459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS05410 (BG910_05405) nuoE 1098183..1098656 (-) 474 WP_089035964.1 NADH-quinone oxidoreductase subunit NuoE -
  BG910_RS05415 (BG910_05410) nuoD 1098656..1099912 (-) 1257 WP_089035965.1 NADH dehydrogenase (quinone) subunit D -
  BG910_RS05420 (BG910_05415) - 1099905..1100492 (-) 588 WP_089035966.1 NADH-quinone oxidoreductase subunit C -
  BG910_RS05425 (BG910_05420) - 1100574..1100804 (-) 231 WP_089035967.1 hypothetical protein -
  BG910_RS13160 (BG910_05425) - 1101273..1101416 (-) 144 WP_089035968.1 T6SS effector amidase Tae4 family protein -
  BG910_RS05435 (BG910_05430) - 1101499..1101978 (-) 480 WP_089035969.1 NADH-quinone oxidoreductase subunit B family protein -
  BG910_RS05440 (BG910_05435) - 1101969..1102325 (-) 357 WP_089035970.1 NADH-quinone oxidoreductase subunit A -
  BG910_RS12770 - 1102668..1102854 (-) 187 Protein_1082 IS1595 family transposase -
  BG910_RS05450 (BG910_05440) comP 1102989..1103459 (-) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS05455 (BG910_05445) comE 1103670..1103975 (-) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16997.52 Da        Isoelectric Point: 9.8043

>NTDB_id=237846 BG910_RS05450 WP_089035780.1 1102989..1103459(-) (comP) [Neisseria chenwenguii strain 10023]
MKQIHPQTRLSGFTLTELLVTLAITGILATVAYPLYRDHVRAANLRAAHAALLENAQFMERFYAQRGSFKANSTTWPELP
VKEAGGFCIRLNGNPRGARADKFMLKAVAKDHEGEPRVLKLDGGLSAVLCGRSDSRCTDGKAYFGGGGDKECRPFG

Nucleotide


Download         Length: 471 bp        

>NTDB_id=237846 BG910_RS05450 WP_089035780.1 1102989..1103459(-) (comP) [Neisseria chenwenguii strain 10023]
ATGAAACAGATTCATCCGCAAACACGGCTTTCCGGCTTTACCTTGACGGAACTGTTGGTCACGCTGGCCATTACCGGCAT
TTTGGCGACGGTTGCCTATCCGCTCTATCGGGATCATGTCCGTGCTGCGAATCTGCGGGCTGCCCATGCGGCGCTGTTGG
AGAATGCGCAGTTTATGGAGCGGTTTTATGCGCAGCGGGGGAGTTTTAAGGCGAATTCGACGACCTGGCCGGAGTTGCCG
GTTAAGGAGGCGGGCGGATTCTGTATCCGTTTAAACGGAAATCCGCGTGGGGCGCGGGCGGATAAGTTTATGCTGAAGGC
GGTGGCGAAGGATCATGAGGGCGAACCGCGGGTGCTGAAGCTGGACGGGGGTTTGTCGGCGGTGTTGTGCGGGCGTTCGG
ACAGCCGGTGTACGGACGGGAAGGCGTATTTCGGCGGGGGCGGGGATAAGGAGTGCCGGCCTTTCGGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-112)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S0X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

60.959

93.59

0.571
  comP Neisseria meningitidis 8013

53.472

92.308

0.494
  comP Neisseria gonorrhoeae MS11

53.521

91.026

0.487

Multiple sequence alignment