Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CFE88_RS09465 Genome accession   NZ_CP022247
Coordinates   1871456..1871965 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain AMT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1866456..1876965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE88_RS09425 (CFE88_09425) - 1867284..1867643 (-) 360 WP_002496090.1 rhodanese-like domain-containing protein -
  CFE88_RS09430 (CFE88_09430) - 1867636..1868154 (-) 519 WP_002496089.1 MarR family winged helix-turn-helix transcriptional regulator -
  CFE88_RS09435 (CFE88_09435) - 1868294..1868638 (-) 345 WP_002447685.1 DUF4260 domain-containing protein -
  CFE88_RS09440 (CFE88_09440) - 1869474..1870064 (-) 591 WP_002447684.1 type 1 glutamine amidotransferase family protein -
  CFE88_RS13140 (CFE88_09450) - 1870445..1870701 (-) 257 Protein_1770 terminase small subunit -
  CFE88_RS13270 (CFE88_09455) - 1870709..1870944 (+) 236 Protein_1771 Abi family protein -
  CFE88_RS09460 (CFE88_09460) rpsR 1871169..1871411 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  CFE88_RS09465 (CFE88_09465) ssbA 1871456..1871965 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  CFE88_RS09470 (CFE88_09470) rpsF 1871988..1872284 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  CFE88_RS09475 (CFE88_09475) - 1872669..1873478 (+) 810 WP_002447680.1 GH25 family lysozyme -
  CFE88_RS09480 (CFE88_09480) - 1873552..1873743 (+) 192 WP_001831355.1 hypothetical protein -
  CFE88_RS09485 (CFE88_09485) ychF 1873937..1875034 (-) 1098 WP_002447679.1 redox-regulated ATPase YchF -
  CFE88_RS09490 (CFE88_09490) - 1875034..1875249 (-) 216 WP_002447678.1 DUF951 domain-containing protein -
  CFE88_RS09495 (CFE88_09495) - 1875270..1876145 (-) 876 WP_002458618.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=237721 CFE88_RS09465 WP_002447681.1 1871456..1871965(-) (ssbA) [Staphylococcus epidermidis strain AMT]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=237721 CFE88_RS09465 WP_002447681.1 1871456..1871965(-) (ssbA) [Staphylococcus epidermidis strain AMT]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment