Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   C7K40_RS08995 Genome accession   NZ_CP027771
Coordinates   1787694..1788290 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782694..1793290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS08975 (C7K40_08970) spx 1783870..1784268 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  C7K40_RS08980 (C7K40_08975) recA 1784559..1785695 (-) 1137 WP_023612663.1 recombinase RecA -
  C7K40_RS08985 (C7K40_08980) cinA 1785784..1787055 (-) 1272 WP_023612670.1 competence/damage-inducible protein A Machinery gene
  C7K40_RS08990 (C7K40_08985) - 1787124..1787684 (-) 561 WP_023612646.1 DNA-3-methyladenine glycosylase I -
  C7K40_RS08995 (C7K40_08990) ruvA 1787694..1788290 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  C7K40_RS09000 (C7K40_08995) - 1788292..1789512 (-) 1221 WP_002992187.1 MFS transporter -
  C7K40_RS09005 (C7K40_09000) hexB 1789523..1791505 (-) 1983 WP_023612647.1 DNA mismatch repair endonuclease MutL Machinery gene
  C7K40_RS09010 (C7K40_09005) - 1791600..1792751 (-) 1152 WP_023612650.1 site-specific integrase -
  C7K40_RS09770 (C7K40_09010) - 1793073..1793216 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=237228 C7K40_RS08995 WP_002982180.1 1787694..1788290(-) (ruvA) [Streptococcus pyogenes strain DMG1800716]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=237228 C7K40_RS08995 WP_002982180.1 1787694..1788290(-) (ruvA) [Streptococcus pyogenes strain DMG1800716]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAGACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424