Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   C7K40_RS02545 Genome accession   NZ_CP027771
Coordinates   467002..468036 (+) Length   344 a.a.
NCBI ID   WP_063629681.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 462002..473036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS02515 (C7K40_02515) tsaE 463067..463528 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  C7K40_RS02520 (C7K40_02520) - 463503..464027 (+) 525 WP_002994338.1 N-acetyltransferase -
  C7K40_RS02525 (C7K40_02525) - 464036..465319 (+) 1284 WP_002983372.1 LCP family protein -
  C7K40_RS02530 (C7K40_02530) - 465430..465786 (-) 357 WP_002988657.1 hypothetical protein -
  C7K40_RS02535 (C7K40_02535) - 465783..466202 (-) 420 WP_002983376.1 HIT family protein -
  C7K40_RS02540 (C7K40_02540) pptA 466274..466999 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  C7K40_RS02545 (C7K40_02545) pptB 467002..468036 (+) 1035 WP_063629681.1 ABC transporter permease Regulator
  C7K40_RS02550 (C7K40_02550) ccrZ 468100..468891 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  C7K40_RS02555 (C7K40_02555) trmB 468891..469526 (+) 636 WP_011184863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  C7K40_RS02565 (C7K40_02565) rimP 469786..470322 (+) 537 WP_030127299.1 ribosome maturation factor RimP -
  C7K40_RS02570 (C7K40_02570) nusA 470497..471654 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  C7K40_RS02575 (C7K40_02575) - 471670..471966 (+) 297 WP_002983486.1 YlxR family protein -
  C7K40_RS02580 (C7K40_02580) - 471959..472261 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40274.52 Da        Isoelectric Point: 10.3713

>NTDB_id=237174 C7K40_RS02545 WP_063629681.1 467002..468036(+) (pptB) [Streptococcus pyogenes strain DMG1800716]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVMLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=237174 C7K40_RS02545 WP_063629681.1 467002..468036(+) (pptB) [Streptococcus pyogenes strain DMG1800716]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTATGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAATGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427