Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ55_RS15540 Genome accession   NZ_CP022135
Coordinates   3124086..3124691 (-) Length   201 a.a.
NCBI ID   WP_023247034.1    Uniprot ID   A0A8F0CF37
Organism   Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3119086..3129691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ55_RS15525 (LFZ55_15525) helD 3119303..3121357 (-) 2055 WP_023247032.1 DNA helicase IV -
  LFZ55_RS15530 (LFZ55_15530) - 3121481..3121927 (+) 447 WP_001261216.1 YccF domain-containing protein -
  LFZ55_RS15535 (LFZ55_15535) yccS 3121946..3124099 (+) 2154 WP_023247033.1 YccS family putative transporter -
  LFZ55_RS15540 (LFZ55_15540) sxy/tfoX 3124086..3124691 (-) 606 WP_023247034.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ55_RS15545 (LFZ55_15545) sulA 3124908..3125417 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  LFZ55_RS15550 (LFZ55_15550) ompA 3125774..3126826 (+) 1053 WP_053530176.1 porin OmpA -
  LFZ55_RS15555 (LFZ55_15555) matP 3126898..3127350 (-) 453 WP_080168804.1 macrodomain Ter protein MatP -
  LFZ55_RS15560 (LFZ55_15560) - 3127536..3129296 (+) 1761 WP_053509640.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23157.89 Da        Isoelectric Point: 9.0103

>NTDB_id=237173 LFZ55_RS15540 WP_023247034.1 3124086..3124691(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=237173 LFZ55_RS15540 WP_023247034.1 3124086..3124691(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGTTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment