Detailed information NTG0237079

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CEK71_RS16660
• Genome accession: NZ_CP022129
• Coordinates: 3689103..3690437 (-)
• Length: 444 a.a.
• NCBI ID: WP_088620433.1
• Uniprot ID: A0A1Z4C203
• Organism: Methylovulum psychrotolerans strain HV10_M2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3684103..3695437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEK71_RS16645 (CEK71_16645)	-	3684793..3686199 (-)	1407	WP_088620430.1	hypothetical protein	-
CEK71_RS16650 (CEK71_16650)	-	3686595..3687137 (+)	543	WP_088620431.1	hypothetical protein	-
CEK71_RS16655 (CEK71_16655)	-	3687710..3688990 (+)	1281	WP_088620432.1	hypothetical protein	-
CEK71_RS16660 (CEK71_16660)	pilR	3689103..3690437 (-)	1335	WP_088620433.1	sigma-54 dependent transcriptional regulator	Regulator
CEK71_RS16665 (CEK71_16665)	-	3690434..3692062 (-)	1629	WP_088620434.1	PAS domain-containing sensor histidine kinase	-
CEK71_RS16670 (CEK71_16670)	sucC	3692231..3693397 (+)	1167	WP_088620435.1	ADP-forming succinate--CoA ligase subunit beta	-
CEK71_RS16675 (CEK71_16675)	sucD	3693394..3694260 (+)	867	WP_088620436.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 48959.26 Da
• Isoelectric Point: 5.6818

>NTDB_id=237079 CEK71_RS16660 WP_088620433.1 3689103..3690437(-) (pilR) [Methylovulum psychrotolerans strain HV10_M2]
MTKPLALIVDDEPDIRELLEITLNRMGINCQCAGTLAQAAALLRQYAFDVCLTDMHLPDGDGLDLIDQIQTLPSPLPIAV
ITAHGNMDTAILAMKKGAFDFVSKPVDLAALRQLIKSALKESGDASDKKPQMQQVLLGESAVMCDIRAKITKLARSQAPV
YISGESGSGKELVARLIHEQSSRHDRPFIAINCGAIPHELIESEFFGHKKGSFTGAVSDKKGLFQAAEGGTLFLDEVADL
PLSLQVKLLRAIQEKKIRPVGEYQEIPVDIRLLSATHRNLAQMVQEGSFRQDLYYRINVIDLHIPPLRERISDITLLIAH
ILAKLTGGNNPSLSFAALAALQQYAFPGNVRELENILERSLALFNGKEIEVDDLNLPVSSPNTNNPADYDPSQGSLEDYL
EDIERKAIATALEENKWNKTAAAKQLGLSFRSFRYRLKKLNMDN

Nucleotide

• Length: 1335 bp

>NTDB_id=237079 CEK71_RS16660 WP_088620433.1 3689103..3690437(-) (pilR) [Methylovulum psychrotolerans strain HV10_M2]
ATGACCAAACCACTGGCACTAATCGTAGATGATGAACCGGATATTCGGGAACTGCTCGAAATCACCCTCAACCGGATGGG
CATTAACTGCCAATGCGCAGGCACACTCGCCCAAGCCGCAGCCCTACTTAGGCAATATGCGTTTGATGTTTGCCTGACCG
ACATGCACTTGCCGGACGGCGACGGACTGGACTTGATCGACCAGATCCAGACCTTACCCAGCCCTTTACCAATTGCGGTG
ATTACCGCGCACGGCAATATGGACACGGCAATTTTGGCGATGAAAAAAGGCGCTTTTGATTTTGTCTCCAAGCCGGTCGA
TTTGGCGGCCTTACGGCAACTCATCAAAAGCGCCCTGAAAGAATCGGGCGATGCCAGCGACAAAAAACCGCAGATGCAAC
AGGTTTTGCTCGGCGAATCGGCGGTCATGTGCGACATCCGCGCCAAAATCACTAAACTGGCGCGTAGCCAAGCCCCGGTC
TATATCAGCGGCGAATCCGGTTCGGGCAAAGAATTGGTCGCCCGACTGATCCATGAACAAAGCTCACGTCACGACCGGCC
ATTTATTGCCATTAATTGCGGGGCCATCCCTCATGAACTGATCGAAAGCGAATTTTTCGGTCATAAAAAAGGCAGTTTCA
CGGGAGCCGTCAGTGATAAGAAGGGGCTGTTCCAAGCGGCGGAAGGCGGCACCTTATTTTTGGATGAAGTCGCCGATTTA
CCTTTGTCCTTGCAAGTGAAGTTGCTACGGGCTATCCAAGAGAAAAAGATCCGCCCGGTCGGCGAATACCAAGAAATTCC
CGTCGATATTCGCCTGTTAAGCGCCACCCACCGCAATTTGGCGCAAATGGTGCAAGAGGGTAGCTTCCGGCAAGATTTGT
ATTACCGCATCAATGTCATTGACCTGCATATCCCGCCGTTACGCGAACGCATCAGCGACATCACCTTGCTCATCGCCCAT
ATTTTAGCAAAATTGACAGGCGGCAATAATCCTAGCTTATCGTTCGCTGCCCTAGCGGCTTTGCAGCAATATGCGTTTCC
GGGCAATGTCCGCGAACTGGAAAATATTTTGGAACGCTCACTGGCTTTATTCAATGGTAAAGAGATTGAAGTTGACGACC
TTAATTTGCCTGTCAGTAGCCCGAACACCAATAACCCCGCCGATTATGATCCGTCTCAGGGGTCACTGGAAGATTATTTG
GAAGACATTGAGCGCAAAGCCATCGCCACCGCGCTAGAAGAGAATAAATGGAACAAAACCGCCGCCGCCAAGCAGTTAGG
GCTGTCTTTCCGCTCCTTCCGCTACCGTCTTAAAAAGCTGAACATGGATAACTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: A0A1Z4C203

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.865	100	0.601
pilR	Acinetobacter baumannii strain A118	50.968	100	0.534
luxO	Vibrio cholerae strain A1552	39.101	100	0.392