Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7M85_RS12310 Genome accession   NZ_CP027766
Coordinates   2166535..2167164 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2013C-3342     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2161535..2172164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M85_RS12295 helD 2161777..2163831 (-) 2055 WP_106910290.1 DNA helicase IV -
  C7M85_RS12300 yccF 2163954..2164400 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C7M85_RS12305 yccS 2164410..2166572 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C7M85_RS12310 sxy/tfoX 2166535..2167164 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7M85_RS12315 sulA 2167383..2167892 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7M85_RS12325 ompA 2168249..2169289 (+) 1041 WP_001400178.1 porin OmpA -
  C7M85_RS12330 matP 2169365..2169817 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7M85_RS12335 ycbZ 2170003..2171763 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=237079 C7M85_RS12310 WP_000839153.1 2166535..2167164(-) (sxy/tfoX) [Escherichia coli strain 2013C-3342]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=237079 C7M85_RS12310 WP_000839153.1 2166535..2167164(-) (sxy/tfoX) [Escherichia coli strain 2013C-3342]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment