Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C7A17_RS21620 Genome accession   NZ_CP027657
Coordinates   4677108..4679123 (+) Length   671 a.a.
NCBI ID   WP_106740351.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4672108..4684123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS21600 (C7A17_21600) - 4672547..4674532 (+) 1986 WP_106743095.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  C7A17_RS21605 (C7A17_21605) comEA/comE1 4674622..4674945 (+) 324 WP_106740346.1 helix-hairpin-helix domain-containing protein Machinery gene
  C7A17_RS21615 (C7A17_21615) - 4675665..4676861 (-) 1197 WP_106740348.1 amino acid aminotransferase -
  C7A17_RS21620 (C7A17_21620) uvrB 4677108..4679123 (+) 2016 WP_106740351.1 excinuclease ABC subunit UvrB Machinery gene
  C7A17_RS21625 (C7A17_21625) - 4679474..4681027 (-) 1554 WP_106740353.1 MDR family MFS transporter -
  C7A17_RS21630 (C7A17_21630) - 4681017..4682066 (-) 1050 WP_106740356.1 HlyD family secretion protein -
  C7A17_RS21635 (C7A17_21635) - 4682174..4683094 (+) 921 WP_106740358.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75899.50 Da        Isoelectric Point: 5.0000

>NTDB_id=236962 C7A17_RS21620 WP_106740351.1 4677108..4679123(+) (uvrB) [Ectopseudomonas mendocina strain NEB698]
MSEFQLVTRFKPAGDQPEAIRLMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKAFF
PNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHL
DRGDKMDQRALLRRLAELQYTRNDMDFARATFRVRGDVIDVFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRF
TFYPKSHYVTPRETLLEAVEHIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRPAGAP
PPTLYDYLPDEALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFEEWEAACPQTIFVSATPGPYEG
EHAGRVVEQVVRPTGLVDPDLEVRPARTQVDDLLSEIRLRVAVGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDIDT
VERVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADNMTGSMQ
RAIGETERRRAKQIAFNEANGIVPKGVQKDVKDILEGAVVPGARSNKRKGMAKAAEESARYENELRSPSEITKRIRQLEE
KMYALARDLEFEAAAQLRDEIQKLRDRLLQV

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=236962 C7A17_RS21620 WP_106740351.1 4677108..4679123(+) (uvrB) [Ectopseudomonas mendocina strain NEB698]
ATGTCCGAGTTTCAGTTGGTGACCCGCTTCAAACCTGCCGGCGATCAGCCCGAGGCGATCCGCCTGATGGTCGAGGGGCT
GGAGGCCGGTCTTTCGCACCAGACCCTGCTCGGCGTGACCGGCTCGGGCAAGACCTTTTCCATTGCCAACGTGATTGCCC
AAGTGCAGCGCCCGACCCTGGTGCTGGCGCCGAACAAGACCCTGGCCGCTCAGCTCTACGGTGAGTTCAAGGCGTTCTTC
CCTAACAACGCCGTGGAGTATTTCGTCTCCTACTACGATTACTACCAGCCCGAAGCCTACGTGCCGTCGTCCGACACCTT
CATTGAGAAGGATGCCTCGATCAATGACCACATCGAGCAGATGCGCCTTTCGGCGACCAAGGCGCTGATCGAGCGCAAGG
ACGTGATCGTGGTGTGCACGGTGTCGTCGATCTACGGCCTGGGTAGCCCCGAGGAGTACCTGAAAATGGTGCTGCACCTC
GACCGCGGCGACAAGATGGATCAGCGTGCGCTGCTGCGGCGCCTGGCCGAGCTGCAGTACACGCGCAACGATATGGATTT
TGCCCGCGCGACGTTTCGTGTGCGCGGCGATGTGATCGATGTATTTCCGGCAGAGTCGGATCTGGAGGCCATTCGCGTCG
AACTGTTCGATGACGAAGTGGAGAGCATCAGCGCCTTCGATCCTCTGACCGGCGAGGTGATCCAGAAGTTGCCGCGTTTC
ACCTTCTACCCCAAGAGCCACTACGTCACCCCGCGCGAAACCCTGCTGGAGGCGGTGGAGCACATCAAGGTCGAGCTGCA
GCAGCGTCTGGAGTACCTGCGTGGGGCGAACAAGCTGGTGGAGGCGCAGCGCCTGGAGCAGCGCACACGCTTCGATCTGG
AGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGCTACCTGTCCGGCCGCCCTGCGGGGGCGCCG
CCGCCCACTCTGTACGACTACCTGCCGGATGAAGCGCTGCTGGTGATCGACGAGTCCCACGTCTCGGTGCCGCAGGTCGG
GGCCATGTACAAGGGCGACCGCTCGCGCAAGGAAACGCTGGTGGAGTACGGCTTCCGCCTGCCGTCGGCGCTGGATAACC
GGCCAATGCGTTTCGAGGAGTGGGAGGCGGCTTGCCCGCAGACCATTTTCGTTTCCGCCACGCCCGGGCCATACGAGGGC
GAGCATGCCGGTCGCGTCGTCGAGCAGGTGGTGCGGCCGACTGGCCTGGTCGATCCTGATCTGGAGGTGCGCCCGGCGCG
TACCCAGGTCGATGATCTGCTCTCGGAGATTCGCTTGCGCGTGGCGGTGGGGGATCGCGTGCTGGTCACCACCCTGACCA
AGCGCATGGCCGAGGATCTGACCGATTACCTGGGTGACCATGACGTCAAGGTGCGTTACCTGCATTCGGACATCGATACG
GTGGAGCGGGTCGAGATCATCCGTGATCTTCGTCTCGGCGCCTTTGATGTGCTGGTGGGTATCAACCTGCTGCGTGAGGG
CCTGGACATGCCCGAGGTATCGCTGGTGGCGATCCTCGATGCGGACAAGGAGGGTTTCTTGCGCAGTGAGCGTTCGCTGA
TCCAGACCATTGGCCGCGCGGCGCGCAACCTCAATGGCAAGGCGATTCTCTACGCCGACAATATGACTGGCTCGATGCAG
CGTGCCATCGGCGAGACCGAGCGCCGCCGTGCCAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGT
GCAGAAAGACGTCAAGGACATTCTCGAAGGCGCCGTGGTGCCGGGCGCGCGCAGCAACAAGCGCAAGGGCATGGCCAAGG
CAGCGGAGGAGAGTGCTCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCACCAAGCGTATTCGTCAGCTGGAAGAG
AAGATGTACGCCCTGGCGCGCGACCTGGAGTTCGAGGCCGCGGCGCAACTGCGCGACGAGATCCAGAAACTGCGGGATCG
GTTGTTGCAGGTGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-542)

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(633-666)

Type III restriction enzyme, res subunit (ResIII)

(11-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.079

98.063

0.55
  uvrB Streptococcus pneumoniae R6

56.079

98.063

0.55
  uvrB Streptococcus pneumoniae D39

56.079

98.063

0.55