Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C7A17_RS14000 Genome accession   NZ_CP027657
Coordinates   3018107..3018751 (-) Length   214 a.a.
NCBI ID   WP_106738613.1    Uniprot ID   A0A7G5DLW5
Organism   Ectopseudomonas mendocina strain NEB698     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013107..3023751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS13975 (C7A17_13975) - 3013231..3014052 (+) 822 Protein_2761 phosphoglycolate phosphatase -
  C7A17_RS13980 (C7A17_13980) trpE 3014118..3015608 (+) 1491 WP_106738609.1 anthranilate synthase component I -
  C7A17_RS13985 (C7A17_13985) - 3015624..3016220 (+) 597 WP_106738610.1 aminodeoxychorismate/anthranilate synthase component II -
  C7A17_RS13990 (C7A17_13990) trpD 3016217..3017263 (+) 1047 WP_106738611.1 anthranilate phosphoribosyltransferase -
  C7A17_RS13995 (C7A17_13995) trpC 3017260..3018060 (+) 801 WP_106738612.1 indole-3-glycerol phosphate synthase TrpC -
  C7A17_RS14000 (C7A17_14000) crp 3018107..3018751 (-) 645 WP_106738613.1 cAMP-activated global transcriptional regulator CRP Regulator
  C7A17_RS14005 (C7A17_14005) - 3018987..3019409 (+) 423 WP_106738614.1 OsmC family protein -
  C7A17_RS14015 (C7A17_14015) coq7 3019600..3020247 (-) 648 WP_106738615.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  C7A17_RS14020 (C7A17_14020) - 3020358..3021167 (-) 810 WP_106738616.1 formylglycine-generating enzyme family protein -
  C7A17_RS14025 (C7A17_14025) - 3021167..3021505 (-) 339 WP_106738617.1 histidine triad nucleotide-binding protein -
  C7A17_RS14030 (C7A17_14030) - 3021606..3023087 (+) 1482 WP_106738618.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24206.11 Da        Isoelectric Point: 8.3454

>NTDB_id=236942 C7A17_RS14000 WP_106738613.1 3018107..3018751(-) (crp) [Ectopseudomonas mendocina strain NEB698]
MVAITLTPKIKNLDKLLAHCHRRRYTSKSTIIYAGDRCETLFFIVKGSVTILIEDDDGREMIIAYLNAGDFFGEMGLFEK
EGTEKERSAWVRAKTECEVAEISYTKFRELTQQDPDILFALGSQMAERLRNTTRKVGDLAFLDVTGRVARTLLDLCKQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=236942 C7A17_RS14000 WP_106738613.1 3018107..3018751(-) (crp) [Ectopseudomonas mendocina strain NEB698]
ATGGTTGCTATTACCCTTACACCTAAAATCAAGAACCTCGATAAACTTCTCGCGCATTGTCACCGTCGTCGCTACACCTC
GAAAAGCACCATCATCTACGCGGGTGATCGCTGCGAAACCCTGTTCTTCATCGTCAAAGGCTCGGTCACCATCCTCATCG
AAGATGACGATGGCCGTGAAATGATCATCGCCTACCTCAACGCCGGCGATTTCTTCGGCGAGATGGGCCTGTTCGAGAAA
GAAGGCACGGAGAAGGAACGCAGCGCCTGGGTTCGCGCCAAGACCGAATGCGAGGTCGCGGAAATCAGCTACACCAAGTT
CCGCGAACTGACCCAGCAGGATCCAGACATCCTCTTTGCCCTCGGCAGTCAGATGGCCGAGCGCCTGCGCAATACCACGC
GCAAGGTCGGTGACCTGGCGTTCCTCGATGTCACCGGGCGTGTCGCCCGCACCCTGCTCGATCTGTGCAAGCAGCCGGAT
GCGATGACCCATCCAGATGGCATGCAGATCAAGATCACTCGTCAGGAAATCGGCCGCATTGTCGGCTGTTCGCGGGAAAT
GGTCGGCCGCGTACTCAAGTCCCTGGAAGAACAGGGGCTGGTACACGTGAAGGGCAAGACCATGGTGGTATTCGGCACTC
GCTGA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G5DLW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

68.473

94.86

0.65
  crp Haemophilus influenzae Rd KW20

60.891

94.393

0.575
  crp Acinetobacter baumannii D1279779

55.172

94.86

0.523