Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CEQ50_RS12910 | Genome accession | NZ_CP022103 |
| Coordinates | 2787672..2788274 (-) | Length | 200 a.a. |
| NCBI ID | WP_017047271.1 | Uniprot ID | A0AAW8GXZ8 |
| Organism | Vibrio anguillarum strain CNEVA NB11008 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2782672..2793274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ50_RS12885 (CEQ50_12925) | aroB | 2783018..2784106 (-) | 1089 | WP_026027894.1 | 3-dehydroquinate synthase | - |
| CEQ50_RS12890 (CEQ50_12930) | aroK | 2784131..2784652 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CEQ50_RS12895 (CEQ50_12935) | pilQ | 2784839..2786524 (-) | 1686 | WP_370685857.1 | type IV pilus secretin PilQ | Machinery gene |
| CEQ50_RS12900 (CEQ50_12940) | pilP | 2786578..2787099 (-) | 522 | WP_017047272.1 | pilus assembly protein PilP | Machinery gene |
| CEQ50_RS12905 (CEQ50_12945) | pilO | 2787086..2787679 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CEQ50_RS12910 (CEQ50_12950) | pilN | 2787672..2788274 (-) | 603 | WP_017047271.1 | PilN domain-containing protein | Machinery gene |
| CEQ50_RS12915 (CEQ50_12955) | pilM | 2788264..2789274 (-) | 1011 | WP_088732907.1 | type IV pilus assembly protein PilM | Machinery gene |
| CEQ50_RS12920 (CEQ50_12960) | - | 2789424..2791922 (+) | 2499 | WP_088732908.1 | penicillin-binding protein 1A | - |
| CEQ50_RS12925 (CEQ50_12965) | oxyR | 2791959..2792849 (-) | 891 | WP_026027425.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22717.24 Da Isoelectric Point: 9.6928
>NTDB_id=236838 CEQ50_RS12910 WP_017047271.1 2787672..2788274(-) (pilN) [Vibrio anguillarum strain CNEVA NB11008]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=236838 CEQ50_RS12910 WP_017047271.1 2787672..2788274(-) (pilN) [Vibrio anguillarum strain CNEVA NB11008]
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCAGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCAGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.021 |
94 |
0.63 |
| pilN | Vibrio campbellii strain DS40M4 |
66.129 |
93 |
0.615 |