Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CEQ50_RS12915 Genome accession   NZ_CP022103
Coordinates   2788264..2789274 (-) Length   336 a.a.
NCBI ID   WP_088732907.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2783264..2794274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS12890 (CEQ50_12930) aroK 2784131..2784652 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CEQ50_RS12895 (CEQ50_12935) pilQ 2784839..2786524 (-) 1686 WP_370685857.1 type IV pilus secretin PilQ Machinery gene
  CEQ50_RS12900 (CEQ50_12940) pilP 2786578..2787099 (-) 522 WP_017047272.1 pilus assembly protein PilP Machinery gene
  CEQ50_RS12905 (CEQ50_12945) pilO 2787086..2787679 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CEQ50_RS12910 (CEQ50_12950) pilN 2787672..2788274 (-) 603 WP_017047271.1 PilN domain-containing protein Machinery gene
  CEQ50_RS12915 (CEQ50_12955) pilM 2788264..2789274 (-) 1011 WP_088732907.1 type IV pilus assembly protein PilM Machinery gene
  CEQ50_RS12920 (CEQ50_12960) - 2789424..2791922 (+) 2499 WP_088732908.1 penicillin-binding protein 1A -
  CEQ50_RS12925 (CEQ50_12965) oxyR 2791959..2792849 (-) 891 WP_026027425.1 DNA-binding transcriptional regulator OxyR -
  CEQ50_RS12930 (CEQ50_12970) - 2792996..2793724 (+) 729 WP_013855882.1 redoxin family protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37423.95 Da        Isoelectric Point: 7.5659

>NTDB_id=236839 CEQ50_RS12915 WP_088732907.1 2788264..2789274(-) (pilM) [Vibrio anguillarum strain CNEVA NB11008]
MGKSMVTGIDIGHHSIKAVVLKLAGDSYALVGYKELFITEDIFSDNHTLDYQKIVKKLKELRKGLPLFSHKVAISVPDNA
VISKVLQIDSDLQAREKEFAIYQAFSHQSPFPIEELSLDFVKVMEKSVSRSSTVSYQVYATRKDVVESRALAAQKAGFLP
IAVDVQIHSLLNIWQLASRAQHRSDWMLMDVGHTQTALCIDFTDKAPFHKEIPLGCQWLSQDSAMSGTNAELADKNERFV
HELIERLQRQLQLFTSVNGAGSLAGIWLSGGGADTPMLAQEISRRLKLECEILDPFLLFNNKLARRQRGKQSGQSFSTAA
GLALRGIEWLESSHVA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=236839 CEQ50_RS12915 WP_088732907.1 2788264..2789274(-) (pilM) [Vibrio anguillarum strain CNEVA NB11008]
ATGGGTAAATCAATGGTTACGGGTATAGATATTGGCCACCATAGTATTAAAGCGGTGGTGTTAAAGCTAGCGGGTGATTC
ATATGCACTCGTCGGTTATAAAGAATTATTTATTACTGAGGACATATTCTCCGATAACCACACGCTGGATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAGAAAGGGTTTACCACTATTTAGTCACAAAGTCGCCATATCGGTACCGGACAATGCG
GTAATAAGTAAGGTATTACAGATAGATAGTGACCTGCAGGCGCGTGAAAAAGAGTTTGCTATTTATCAGGCATTTTCTCA
TCAGTCACCGTTCCCGATAGAAGAACTGAGTCTCGATTTCGTCAAAGTGATGGAAAAAAGCGTAAGTCGCAGTAGCACCG
TAAGTTATCAAGTTTACGCCACTCGTAAAGACGTCGTGGAAAGCCGTGCGTTAGCGGCTCAAAAAGCGGGCTTTTTACCG
ATCGCGGTTGATGTGCAAATACACAGTTTGTTAAACATTTGGCAGTTGGCGAGCAGGGCACAACATCGCAGCGATTGGAT
GCTCATGGATGTGGGCCATACCCAAACGGCGCTCTGTATTGATTTTACTGATAAAGCCCCTTTTCATAAAGAGATCCCTC
TCGGTTGTCAGTGGTTGTCCCAAGACAGCGCGATGTCGGGCACCAATGCCGAATTAGCCGATAAAAACGAGCGCTTTGTG
CATGAGTTGATCGAGCGACTTCAACGTCAGTTGCAGCTTTTCACCTCCGTCAATGGCGCGGGCAGTTTAGCAGGCATTTG
GCTCTCAGGTGGTGGCGCAGATACTCCGATGTTGGCGCAAGAGATTTCGCGGCGTCTCAAGCTTGAGTGCGAGATTCTCG
ATCCCTTCCTTCTGTTTAACAATAAGTTAGCGAGACGCCAGCGAGGTAAGCAGTCTGGGCAGAGTTTTAGCACCGCAGCT
GGTCTTGCACTGCGTGGTATCGAGTGGTTGGAGTCTTCTCATGTTGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

67.16

100

0.676
  pilM Vibrio campbellii strain DS40M4

52.083

100

0.521

Multiple sequence alignment