Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CEQ50_RS12895 Genome accession   NZ_CP022103
Coordinates   2784839..2786524 (-) Length   561 a.a.
NCBI ID   WP_370685857.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779839..2791524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS12875 (CEQ50_12915) - 2780570..2781400 (-) 831 WP_013855892.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CEQ50_RS12880 (CEQ50_12920) - 2781470..2782969 (-) 1500 WP_088732906.1 SPOR domain-containing protein -
  CEQ50_RS12885 (CEQ50_12925) aroB 2783018..2784106 (-) 1089 WP_026027894.1 3-dehydroquinate synthase -
  CEQ50_RS12890 (CEQ50_12930) aroK 2784131..2784652 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CEQ50_RS12895 (CEQ50_12935) pilQ 2784839..2786524 (-) 1686 WP_370685857.1 type IV pilus secretin PilQ Machinery gene
  CEQ50_RS12900 (CEQ50_12940) pilP 2786578..2787099 (-) 522 WP_017047272.1 pilus assembly protein PilP Machinery gene
  CEQ50_RS12905 (CEQ50_12945) pilO 2787086..2787679 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CEQ50_RS12910 (CEQ50_12950) pilN 2787672..2788274 (-) 603 WP_017047271.1 PilN domain-containing protein Machinery gene
  CEQ50_RS12915 (CEQ50_12955) pilM 2788264..2789274 (-) 1011 WP_088732907.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 61142.36 Da        Isoelectric Point: 4.8177

>NTDB_id=236835 CEQ50_RS12895 WP_370685857.1 2784839..2786524(-) (pilQ) [Vibrio anguillarum strain CNEVA NB11008]
MVFRSLLFGLLLSVAGLSVAAETAQTNELKGIDFRVNKNKDAVLIVELASPSTVVNVQKVADGLQIELLKTDVSNEKLYV
LDVKDFATVVESIEVLRKEPSTQLLATIHGEFKYDYSLKGKYLEVVIGKLKEQEKPKPKSILEKEGKLISINFQDIPVRN
VLQLIADYNAFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQLEKARLAEELG
DLRSEIIKINFAKASDIAQMIGGEGAVSMLSERGSISIDERTNSLLIRELAENIVVIRQIVESLDIPVKQVQIEARIVTV
NEGNLDELGVRWGFTSTNGNNTAGGSIESNLFQVGKLGESTLPVDDFLNVNLAATSANASSIAFQVAKLGSDMLLDLELS
ALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGDI
VKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVNNTVDKVPLLGDLPLLGALFRRSYEQVGKSELLIFVTPKVVI
Q

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=236835 CEQ50_RS12895 WP_370685857.1 2784839..2786524(-) (pilQ) [Vibrio anguillarum strain CNEVA NB11008]
ATGGTATTTCGGAGCCTCTTATTTGGCTTATTATTGAGTGTGGCAGGGCTAAGTGTGGCGGCAGAAACGGCGCAGACCAA
CGAGCTTAAAGGCATTGATTTTCGAGTCAATAAAAACAAAGACGCTGTATTGATTGTTGAACTCGCATCACCTTCGACAG
TAGTTAATGTGCAGAAAGTGGCTGACGGTTTACAAATTGAACTGCTTAAGACGGATGTCTCCAATGAGAAACTGTATGTC
TTAGACGTCAAAGATTTTGCAACCGTTGTTGAGAGTATCGAGGTATTGCGCAAAGAGCCAAGTACACAGTTACTGGCGAC
CATTCATGGCGAGTTTAAGTATGATTACAGCTTGAAAGGGAAATACCTTGAGGTGGTAATTGGCAAACTGAAAGAACAAG
AAAAACCTAAGCCGAAGAGCATTCTTGAGAAAGAGGGCAAGCTTATCTCGATTAACTTTCAAGATATTCCTGTGCGAAAT
GTTTTGCAGCTTATCGCAGATTATAACGCGTTTAACCTAGTCGTCTCAGATTCGGTCACTGGTAATCTGACGCTACGGCT
TGATGGCGTGCCTTGGCAGCAAGTGCTCGATATCATTTTGCAAGTCAAGGGATTAGATAAGCGTGTTGACGGCAATGTGA
TTTTAGTTGCACCTAAAGAAGAGTTGGATTTACGTGAAAAGCAGCAGCTTGAAAAGGCACGTTTGGCTGAAGAGTTGGGC
GATCTGCGTTCTGAAATCATCAAAATTAATTTTGCTAAGGCGTCTGATATTGCGCAGATGATTGGTGGCGAAGGGGCAGT
CAGCATGTTGTCTGAGCGAGGTTCCATCAGTATCGACGAGCGAACCAACTCACTGCTGATCCGCGAATTGGCTGAGAATA
TTGTGGTGATACGCCAAATTGTTGAATCGCTCGATATCCCGGTCAAACAGGTACAGATTGAAGCGCGCATTGTTACGGTC
AACGAAGGTAATTTGGATGAACTTGGCGTACGCTGGGGCTTTACTTCGACCAATGGCAACAACACCGCAGGCGGAAGTAT
TGAAAGTAATTTATTCCAAGTGGGCAAATTGGGGGAAAGCACATTGCCCGTTGATGACTTCCTTAACGTAAACTTAGCGG
CGACCTCTGCTAACGCCTCAAGTATTGCCTTCCAAGTGGCTAAGTTGGGGTCGGATATGTTGTTGGATTTAGAGCTTTCA
GCGCTACAACGTGAGTCGAAAGCGGAGATCATTTCCAGCCCTCGTTTGATCACGACCAACAAGAAACCCGCTTATATCGA
GCAGGGTACGGAGATCCCTTATCTGGAGTCTTCTTCCAGCGGGGCAACGACAGTCGCCTTCAAAAAAGCGGTGCTGAGTT
TAAAAGTGACGCCACAGATAACGCCGGATAATCGTTTAGTGTTAGATCTCAGTGTCACTCAAGACCGGCCTGGGGATATT
GTAAAAACAGGGACGGGAGAAGCGGTTGCAATTAATACTCAGCGTATTGGCACTCAAGTATTGGTCAATAATGGAGAAAC
CGTAGTCCTTGGTGGAATATTCCAACATAGCGTCAACAATACGGTGGATAAGGTGCCATTGCTTGGTGATTTGCCATTAC
TTGGTGCATTGTTCCGCCGTTCCTATGAGCAAGTGGGCAAAAGTGAGCTGCTGATTTTCGTGACACCGAAAGTCGTCATT
CAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(401-559)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

83.542

99.643

0.832
  pilQ Vibrio cholerae strain A1552

83.542

99.643

0.832
  pilQ Vibrio campbellii strain DS40M4

79.129

98.217

0.777
  pilQ Legionella pneumophila strain Lp02

42.222

96.257

0.406
  pilQ Legionella pneumophila strain ERS1305867

42.222

96.257

0.406
  pilQ Pseudomonas aeruginosa PAK

39.855

98.396

0.392
  comQ Acinetobacter baylyi ADP1

39.247

99.465

0.39
  pilQ Acinetobacter baumannii strain A118

36.661

100

0.38
  pilQ Acinetobacter baumannii D1279779

36.661

100

0.38

Multiple sequence alignment