Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CEQ50_RS09220 Genome accession   NZ_CP022103
Coordinates   2027041..2029284 (-) Length   747 a.a.
NCBI ID   WP_088732650.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2022041..2034284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS09195 (CEQ50_09230) - 2022776..2023294 (+) 519 WP_017045183.1 cytochrome b -
  CEQ50_RS09200 (CEQ50_09235) kdsB 2023337..2024089 (-) 753 WP_088732648.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CEQ50_RS09205 (CEQ50_09240) - 2024089..2024268 (-) 180 WP_013856535.1 Trm112 family protein -
  CEQ50_RS09210 (CEQ50_09245) lpxK 2024249..2025256 (-) 1008 WP_088732649.1 tetraacyldisaccharide 4'-kinase -
  CEQ50_RS09215 (CEQ50_09250) msbA 2025260..2027008 (-) 1749 WP_017045180.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CEQ50_RS09220 (CEQ50_09255) comEC 2027041..2029284 (-) 2244 WP_088732650.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CEQ50_RS09225 (CEQ50_09260) - 2029291..2029800 (+) 510 WP_010319231.1 DUF2062 domain-containing protein -
  CEQ50_RS09230 (CEQ50_09265) lolE 2029939..2031183 (-) 1245 WP_013856531.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CEQ50_RS09235 (CEQ50_09270) lolD 2031184..2031870 (-) 687 WP_047687976.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CEQ50_RS09240 (CEQ50_09275) lolC 2031863..2033071 (-) 1209 WP_088732651.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  CEQ50_RS09245 (CEQ50_09280) - 2033237..2033806 (+) 570 WP_017048079.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83405.23 Da        Isoelectric Point: 9.4397

>NTDB_id=236832 CEQ50_RS09220 WP_088732650.1 2027041..2029284(-) (comEC) [Vibrio anguillarum strain CNEVA NB11008]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWSMPLFAILILSVGYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLALKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTQRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSIIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=236832 CEQ50_RS09220 WP_088732650.1 2027041..2029284(-) (comEC) [Vibrio anguillarum strain CNEVA NB11008]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGAGTATGCCTCTATTCGCCATTCTCATACTCTCTGTCGGTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATAGCTCCTTTAGCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCACA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTTCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTTATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTCAGCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CTGCTTATTTTTTCGGTGGAGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTGTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTACTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTGGCGGTTTACAGCATCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTGGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGCGGTGATCACATCCAGGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
TGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACCGTAGCGCGTGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCCATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAATCCTGAGGTCGCTATTGCTTCGCTCGCCAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.139

100

0.522
  comEC Vibrio parahaemolyticus RIMD 2210633

44.079

100

0.448
  comEC Vibrio campbellii strain DS40M4

43.874

100

0.446

Multiple sequence alignment