Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   TT_RS08110 Genome accession   NC_005835
Coordinates   1518889..1519698 (-) Length   269 a.a.
NCBI ID   WP_011173975.1    Uniprot ID   Q72H91
Organism   Thermus thermophilus HB27     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513889..1524698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT_RS08080 (TT_C1598) rsmI 1514050..1514844 (-) 795 WP_011173969.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TT_RS08085 (TT_C1599) - 1514846..1515340 (-) 495 WP_011173970.1 hypothetical protein -
  TT_RS08090 (TT_C1600) - 1515404..1515931 (-) 528 WP_011173971.1 inorganic diphosphatase -
  TT_RS08095 (TT_C1601) - 1515964..1516590 (+) 627 WP_011173972.1 YcxB family protein -
  TT_RS08100 (TT_C1602) comEA 1516563..1516871 (+) 309 WP_024119555.1 ComEA family DNA-binding protein Machinery gene
  TT_RS08105 (TT_C1603) comA/comEC 1516868..1518901 (+) 2034 WP_011173974.1 ComEC/Rec2 family competence protein Machinery gene
  TT_RS08110 (TT_C1604) spo0J 1518889..1519698 (-) 810 WP_011173975.1 ParB/RepB/Spo0J family partition protein Regulator
  TT_RS08115 (TT_C1605) soj 1519682..1520431 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  TT_RS08120 (TT_C1606) rsmG 1520425..1521174 (-) 750 WP_011173977.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TT_RS08125 (TT_C1607) mnmG 1521174..1522967 (-) 1794 WP_011173978.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  TT_RS08130 (TT_C1608) dnaA 1523030..1524340 (+) 1311 WP_008633967.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29750.61 Da        Isoelectric Point: 10.1293

>NTDB_id=23681 TT_RS08110 WP_011173975.1 1518889..1519698(-) (spo0J) [Thermus thermophilus HB27]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=23681 TT_RS08110 WP_011173975.1 1518889..1519698(-) (spo0J) [Thermus thermophilus HB27]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGCTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCCCCTAAGCGCTCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1VZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.4

92.937

0.394

Multiple sequence alignment