Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CEQ50_RS01915 Genome accession   NZ_CP022103
Coordinates   389511..390158 (-) Length   215 a.a.
NCBI ID   WP_029388192.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 384511..395158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS01905 (CEQ50_01910) uvrA 385549..388371 (-) 2823 WP_088733037.1 excinuclease ABC subunit UvrA -
  CEQ50_RS01910 (CEQ50_01915) galU 388524..389393 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CEQ50_RS01915 (CEQ50_01920) qstR 389511..390158 (-) 648 WP_029388192.1 LuxR C-terminal-related transcriptional regulator Regulator
  CEQ50_RS01920 (CEQ50_01925) - 390581..391744 (+) 1164 WP_045591522.1 tyrosine-type recombinase/integrase -
  CEQ50_RS19880 - 391744..393870 (+) 2127 WP_096000857.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24981.71 Da        Isoelectric Point: 8.1663

>NTDB_id=236806 CEQ50_RS01915 WP_029388192.1 389511..390158(-) (qstR) [Vibrio anguillarum strain CNEVA NB11008]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPETLRQAYCSDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=236806 CEQ50_RS01915 WP_029388192.1 389511..390158(-) (qstR) [Vibrio anguillarum strain CNEVA NB11008]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTCTGTTTAGATAAAGAGCAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGGCTGCCCATTCCTAAAATTGAGCCCGAAACCCTGCGCCAAGCGTATTGTTCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GTCAGTTACTGCACTACTATCGCTACGCGTTTGAGTCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.29

99.535

0.67
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526

Multiple sequence alignment