Detailed information NTG0236679

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CEP86_RS12810
• Genome accession: NZ_CP022097
• Coordinates: 2774569..2775903 (-)
• Length: 444 a.a.
• NCBI ID: WP_011063538.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain FDAARGOS_307
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2769569..2780903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEP86_RS12795 (CEP86_12745)	-	2769939..2773001 (+)	3063	WP_011063541.1	pilus assembly protein	-
CEP86_RS12800 (CEP86_12750)	-	2773017..2773418 (+)	402	WP_011063540.1	type IV pilin protein	-
CEP86_RS12805 (CEP86_12755)	thiO	2773472..2774572 (+)	1101	WP_011063539.1	glycine oxidase ThiO	-
CEP86_RS12810 (CEP86_12760)	pilR	2774569..2775903 (-)	1335	WP_011063538.1	sigma-54 dependent transcriptional regulator	Regulator
CEP86_RS12815 (CEP86_12765)	-	2776329..2776562 (-)	234	WP_011063537.1	PP0621 family protein	-
CEP86_RS12820 (CEP86_12770)	-	2776687..2777712 (-)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
CEP86_RS12825 (CEP86_12775)	rluD	2777863..2778825 (+)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CEP86_RS12830 (CEP86_12780)	pgeF	2778822..2779547 (+)	726	WP_011063534.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49274.55 Da
• Isoelectric Point: 8.6800

>NTDB_id=236679 CEP86_RS12810 WP_011063538.1 2774569..2775903(-) (pilR) [Pseudomonas protegens strain FDAARGOS_307]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=236679 CEP86_RS12810 WP_011063538.1 2774569..2775903(-) (pilR) [Pseudomonas protegens strain FDAARGOS_307]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCTGGCCACGGACTGCGCAACGGATGACCCTGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAGCGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGATCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.752	100	0.473
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367