Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CEP67_RS03855 Genome accession   NZ_CP022096
Coordinates   806612..807241 (-) Length   209 a.a.
NCBI ID   WP_040806996.1    Uniprot ID   A0A9Q4D808
Organism   Staphylococcus pettenkoferi strain FDAARGOS_288     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 801612..812241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP67_RS03825 (CEP67_03830) - 801889..803130 (-) 1242 WP_002472977.1 aminopeptidase -
  CEP67_RS03830 (CEP67_03835) - 803144..803344 (-) 201 WP_002472952.1 DUF1128 family protein -
  CEP67_RS03835 (CEP67_03840) - 803479..803943 (+) 465 WP_088606345.1 low molecular weight protein-tyrosine-phosphatase -
  CEP67_RS03840 (CEP67_03845) - 803948..804250 (+) 303 WP_002472981.1 hypothetical protein -
  CEP67_RS03845 (CEP67_03850) - 804508..805740 (+) 1233 WP_002472988.1 YihY/virulence factor BrkB family protein -
  CEP67_RS03850 (CEP67_03855) - 805950..806519 (+) 570 WP_002472972.1 beta-class carbonic anhydrase -
  CEP67_RS03855 (CEP67_03860) vraR 806612..807241 (-) 630 WP_040806996.1 response regulator transcription factor Regulator
  CEP67_RS03860 (CEP67_03865) vraS 807231..808274 (-) 1044 WP_002472963.1 sensor histidine kinase Regulator
  CEP67_RS03865 (CEP67_03870) liaF 808271..808972 (-) 702 WP_002472955.1 cell wall-active antibiotics response protein LiaF -
  CEP67_RS03870 (CEP67_03875) - 809159..809554 (-) 396 WP_002472969.1 hypothetical protein -
  CEP67_RS03875 (CEP67_03880) map 809715..810479 (-) 765 WP_002472950.1 type I methionyl aminopeptidase -
  CEP67_RS03880 (CEP67_03885) - 810636..811625 (+) 990 WP_088606346.1 FUSC family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23693.30 Da        Isoelectric Point: 4.7039

>NTDB_id=236647 CEP67_RS03855 WP_040806996.1 806612..807241(-) (vraR) [Staphylococcus pettenkoferi strain FDAARGOS_288]
MMIKVLFVDDHEMVRIGISSYLSTQPDLEVVGEGESGKDAIEKAHELQPDLILMDLVMDDMDGVEATTQIKKDLPHIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTYNGESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHKLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=236647 CEP67_RS03855 WP_040806996.1 806612..807241(-) (vraR) [Staphylococcus pettenkoferi strain FDAARGOS_288]
GTGATGATTAAAGTATTATTCGTTGATGACCATGAGATGGTACGTATCGGAATTTCTAGTTACTTATCTACGCAACCTGA
CCTCGAAGTCGTAGGGGAAGGGGAATCAGGGAAAGATGCCATTGAGAAAGCGCACGAATTACAACCTGATTTAATATTGA
TGGATCTCGTGATGGACGATATGGATGGCGTAGAAGCCACAACGCAAATTAAGAAAGACTTACCACATATTAAAGTACTC
ATGCTTACAAGCTATATTGAGGATAATGAAGTTTATCGCGCATTAGATGCAGGCGTGGATAGTTACATCCTCAAGACGAC
GAGTGCGAGTGACATTGCTGAAGCGATTCGTAAGACGTATAATGGCGAATCTGTGTTTGAAGCGGAAGTATTAGTTAAAA
TGCGTAATCGAATGAAACAACGTGCTGAACTTTATGAGATGTTAACAGAACGTGAGATGGAAATCTTATTGCTTATCGCG
AAAGGTTATTCTAACCAAGAAATCGCGAGTGCCTCTCACATTACGATTAAAACAGTGAAGACGCATGTGAGTAATATTCT
CAGCAAACTCGAAGTTCAAGATAGAACCCAAGCGGTGATCTATGCTTTCCAACACAAATTAATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment