Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CEQ33_RS03560 Genome accession   NZ_CP022093
Coordinates   625567..626442 (-) Length   291 a.a.
NCBI ID   WP_011303269.1    Uniprot ID   Q49X34
Organism   Staphylococcus saprophyticus strain FDAARGOS_355     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 620567..631442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ33_RS03545 (CEQ33_03545) xerC 620827..621717 (-) 891 WP_011303266.1 tyrosine recombinase XerC -
  CEQ33_RS03550 (CEQ33_03550) trmFO 621836..623143 (-) 1308 WP_011303267.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CEQ33_RS03555 (CEQ33_03555) topA 623298..625364 (-) 2067 WP_011303268.1 type I DNA topoisomerase -
  CEQ33_RS03560 (CEQ33_03560) dprA 625567..626442 (-) 876 WP_011303269.1 DNA-processing protein DprA Machinery gene
  CEQ33_RS03565 (CEQ33_03565) sucD 626749..627654 (-) 906 WP_011303270.1 succinate--CoA ligase subunit alpha -
  CEQ33_RS03570 (CEQ33_03570) sucC 627676..628842 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  CEQ33_RS03575 (CEQ33_03575) - 628950..629720 (-) 771 WP_011303272.1 ribonuclease HII -
  CEQ33_RS03580 (CEQ33_03580) ylqF 629727..630587 (-) 861 WP_011303273.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33710.41 Da        Isoelectric Point: 10.3610

>NTDB_id=236608 CEQ33_RS03560 WP_011303269.1 625567..626442(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_355]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=236608 CEQ33_RS03560 WP_011303269.1 625567..626442(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_355]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49X34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375

Multiple sequence alignment