Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CEQ14_RS10685 Genome accession   NZ_CP022056
Coordinates   2141139..2142014 (-) Length   291 a.a.
NCBI ID   WP_069795371.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_336     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2136399..2159650 2141139..2142014 within 0


Gene organization within MGE regions


Location: 2136399..2159650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ14_RS10670 (CEQ14_10695) xerC 2136399..2137289 (-) 891 WP_011303266.1 tyrosine recombinase XerC -
  CEQ14_RS10675 (CEQ14_10700) trmFO 2137408..2138715 (-) 1308 WP_069795370.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CEQ14_RS10680 (CEQ14_10705) topA 2138870..2140936 (-) 2067 WP_011303268.1 type I DNA topoisomerase -
  CEQ14_RS10685 (CEQ14_10710) dprA 2141139..2142014 (-) 876 WP_069795371.1 DNA-processing protein DprA Machinery gene
  CEQ14_RS10690 (CEQ14_10715) sucD 2142321..2143226 (-) 906 WP_011303270.1 succinate--CoA ligase subunit alpha -
  CEQ14_RS10695 (CEQ14_10720) sucC 2143248..2144414 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  CEQ14_RS10700 (CEQ14_10725) - 2144522..2145292 (-) 771 WP_069794807.1 ribonuclease HII -
  CEQ14_RS10705 (CEQ14_10730) ylqF 2145299..2146159 (-) 861 WP_069795372.1 ribosome biogenesis GTPase YlqF -
  CEQ14_RS10710 (CEQ14_10735) - 2146527..2149106 (+) 2580 WP_069795373.1 YfhO family protein -
  CEQ14_RS10715 (CEQ14_10740) - 2149149..2151770 (+) 2622 WP_105577682.1 YfhO family protein -
  CEQ14_RS10720 (CEQ14_10745) rplS 2151909..2152259 (-) 351 WP_002483481.1 50S ribosomal protein L19 -
  CEQ14_RS10725 (CEQ14_10750) trmD 2152363..2153100 (-) 738 WP_002483482.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CEQ14_RS10730 (CEQ14_10755) rimM 2153100..2153606 (-) 507 WP_002483483.1 ribosome maturation factor RimM -
  CEQ14_RS10735 (CEQ14_10760) rpsP 2153832..2154098 (-) 267 WP_002483484.1 30S ribosomal protein S16 -
  CEQ14_RS10740 (CEQ14_10765) - 2154517..2155269 (+) 753 WP_011303277.1 3-oxoacyl-ACP reductase -
  CEQ14_RS10745 (CEQ14_10770) - 2155291..2156589 (+) 1299 WP_069795374.1 LLM class flavin-dependent oxidoreductase -
  CEQ14_RS10750 (CEQ14_10775) ffh 2156715..2158082 (-) 1368 WP_011303279.1 signal recognition particle protein -
  CEQ14_RS10755 (CEQ14_10780) - 2158111..2158443 (-) 333 WP_011303280.1 putative DNA-binding protein -
  CEQ14_RS10760 (CEQ14_10785) ftsY 2158430..2159650 (-) 1221 WP_011303281.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33692.38 Da        Isoelectric Point: 10.3610

>NTDB_id=236271 CEQ14_RS10685 WP_069795371.1 2141139..2142014(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_336]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMIAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=236271 CEQ14_RS10685 WP_069795371.1 2141139..2142014(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_336]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATTGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50

100

0.509
  dprA Staphylococcus aureus N315

50

100

0.509
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375

Multiple sequence alignment