Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   CEQ14_RS07525 Genome accession   NZ_CP022056
Coordinates   1507341..1508384 (+) Length   347 a.a.
NCBI ID   WP_011302781.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_336     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1502341..1513384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ14_RS07490 (CEQ14_12990) - 1502738..1502953 (+) 216 WP_103301910.1 helix-turn-helix domain-containing protein -
  CEQ14_RS07495 (CEQ14_12995) - 1502971..1503276 (+) 306 WP_069795146.1 helix-turn-helix domain-containing protein -
  CEQ14_RS07500 (CEQ14_07525) - 1503282..1504145 (+) 864 WP_263970512.1 IS3 family transposase -
  CEQ14_RS07505 (CEQ14_07530) - 1504223..1505209 (-) 987 WP_002482841.1 aromatic acid exporter family protein -
  CEQ14_RS07510 (CEQ14_07535) map 1505384..1506136 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  CEQ14_RS07515 (CEQ14_07540) - 1506240..1506626 (+) 387 WP_011302779.1 hypothetical protein -
  CEQ14_RS07520 (CEQ14_07545) liaF 1506643..1507344 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  CEQ14_RS07525 (CEQ14_07550) vraS 1507341..1508384 (+) 1044 WP_011302781.1 sensor histidine kinase Regulator
  CEQ14_RS07530 (CEQ14_07555) vraR 1508374..1509003 (+) 630 WP_105577666.1 response regulator transcription factor Regulator
  CEQ14_RS07535 (CEQ14_07560) - 1509160..1510332 (-) 1173 WP_011302782.1 YihY/virulence factor BrkB family protein -
  CEQ14_RS07540 (CEQ14_07565) - 1510744..1511028 (-) 285 WP_002482848.1 hypothetical protein -
  CEQ14_RS07545 (CEQ14_07570) - 1511035..1511499 (-) 465 WP_011302783.1 low molecular weight protein-tyrosine-phosphatase -
  CEQ14_RS07550 (CEQ14_07575) - 1511634..1511837 (+) 204 WP_002482850.1 DUF1128 family protein -
  CEQ14_RS07555 (CEQ14_07580) - 1511851..1513089 (+) 1239 WP_011302784.1 aminopeptidase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40050.55 Da        Isoelectric Point: 6.4221

>NTDB_id=236255 CEQ14_RS07525 WP_011302781.1 1507341..1508384(+) (vraS) [Staphylococcus saprophyticus strain FDAARGOS_336]
MNHYFRAIGSMLILVYSTFFAIFFIDKVFVNIMYFQGMFYTQIFGIPVLLFLNLMVILLCIIVGSVLAYKINQQNHWLKD
QIERSIEGQTVGINDQNIELYNETIELYQTLVPLNQEVHKLRMKTQNLTNESYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETELKAPLDQQIPVLEKMIQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVVDLQKKVPMKVVHDI
EEFKVPKGIEDHLFRITQEAISNTLRHSKGTKVTIELFNREEYLLLRIQDNGKGFNVDDKVEQSYGLKNMRERALEIGAT
FHIVSLPDAGTRIEVKAPLNKEDSNAD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=236255 CEQ14_RS07525 WP_011302781.1 1507341..1508384(+) (vraS) [Staphylococcus saprophyticus strain FDAARGOS_336]
ATGAATCACTACTTTAGAGCGATCGGGTCCATGTTGATATTAGTATATAGTACGTTTTTTGCCATATTCTTTATTGATAA
AGTGTTTGTTAATATAATGTATTTTCAAGGTATGTTTTATACTCAAATATTTGGCATACCTGTACTGCTTTTTTTAAATC
TAATGGTGATTTTACTCTGTATTATTGTAGGTTCTGTCTTAGCATATAAAATCAATCAGCAAAATCATTGGTTAAAAGAT
CAAATTGAACGTTCAATAGAAGGTCAAACAGTGGGTATCAATGATCAAAATATTGAATTATACAACGAAACAATCGAACT
ATATCAAACGCTTGTGCCTTTAAATCAAGAAGTACATAAATTAAGAATGAAAACACAGAACCTGACGAATGAATCTTATA
ATATCAATGATGTTAAAGTTAAGAAAATTATAGAAGACGAACGCCAACGTTTAGCGCGTGAATTACATGATTCAGTTAGT
CAACAATTATTCGCAGCAAGTATGATGTTATCAGCAATTAAAGAGACAGAATTGAAGGCCCCATTGGACCAACAAATACC
AGTATTAGAAAAAATGATTCAAGATTCCCAATTAGAAATGAGAGCACTACTATTACACTTAAGACCTATTGGTTTGAAAG
ATAAATCTTTAGGTGAGGGTATTAAAGATTTAGTCGTTGATTTACAGAAAAAAGTACCAATGAAAGTGGTACATGATATT
GAAGAATTCAAAGTACCAAAAGGTATCGAGGACCATTTATTCCGTATTACGCAAGAAGCCATTTCTAATACGCTAAGACA
TTCTAAAGGAACGAAGGTCACAATTGAATTATTTAATAGGGAAGAATATTTGTTATTGCGTATACAAGATAATGGTAAAG
GGTTTAATGTAGATGATAAGGTAGAACAAAGTTATGGATTAAAAAATATGCGCGAACGTGCACTAGAAATAGGTGCAACA
TTTCATATCGTTTCTTTGCCTGATGCAGGTACGAGAATTGAAGTAAAGGCACCATTAAATAAGGAGGATTCAAATGCCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

87.32

100

0.873


Multiple sequence alignment