Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BJE04_RS11260 Genome accession   NC_005139
Coordinates   2386339..2388588 (-) Length   749 a.a.
NCBI ID   WP_011079970.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2381339..2393588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS11235 (VV2352) - 2381673..2382461 (-) 789 WP_011150830.1 GGDEF domain-containing protein -
  BJE04_RS11240 (VV2353) kdsB 2382633..2383388 (-) 756 WP_011150831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BJE04_RS11245 (VV2354) - 2383388..2383567 (-) 180 WP_011079973.1 Trm112 family protein -
  BJE04_RS11250 (VV2355) lpxK 2383548..2384555 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  BJE04_RS11255 (VV2357) msbA 2384555..2386306 (-) 1752 WP_043877274.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BJE04_RS11260 (VV2359) comEC 2386339..2388588 (-) 2250 WP_011079970.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BJE04_RS11265 (VV2358) - 2388597..2389106 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  BJE04_RS11270 (VV2361) lolE 2389302..2390546 (-) 1245 WP_011150837.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BJE04_RS11275 (VV2362) lolD 2390558..2391241 (-) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BJE04_RS11280 (VV2363) lolC 2391234..2392439 (-) 1206 WP_011150839.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BJE04_RS11285 (VV2364) - 2392705..2393274 (+) 570 WP_011079965.1 hypothetical protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 84081.20 Da        Isoelectric Point: 8.7042

>NTDB_id=23589 BJE04_RS11260 WP_011079970.1 2386339..2388588(-) (comEC) [Vibrio vulnificus YJ016]
MTLLGNNWLLASFSATLISASYWPLMPSWPWLMLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCL
AMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADLSLWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHFIRWQLSVVLI
ILLSISSLSVHSLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
AGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHDFEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIRDPEQLNSDVVLVPHHGSQTSSIEPFVNAVQAGVAIASLAKGNQWGMPQPKVVETYRRHRTQWFDTGELGQITL
YVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=23589 BJE04_RS11260 WP_011079970.1 2386339..2388588(-) (comEC) [Vibrio vulnificus YJ016]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGCAAAACGTGTCGTTACTTGCTGGGGG
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGC
AATAAATAATAGTCATTTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATC
AAATCGTAGCGCATGTTACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTC
AGCCAAGGCATCGTTGGACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGC
GCTGATCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCG
ACGACATTACCGACGAGCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATT
GGTATGGCTTTTGGTATCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGC
TATTGGACTGAGTCTCAGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCA
CGTTAGTCGCCTTGTTCTCGTTTACGTCGGGGCAAGTCGGTCGTTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGTCTT
GCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCCTGGTTTAGT
TTGGTGGTGGTGCCTGTTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTATGGCA
GTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGTTGGTGGGGGCTGTCTTCTTTTC
AGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTGAGACATTTTATTCGCTGGCAACTTTCTGTCGTTCTGATC
ATTTTGCTCAGCATTTCTTCACTATCGGTTCACTCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGAAGTATTGCGCAGC
AAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCAT
GCAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTG
TGTTAAAGGTCATGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACA
ATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTG
GCTGAGTGGATTCTGATTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGAAAGTGGTCGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTG
TATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-682)

Domain of unknown function (DUF4131) (DUF4131)

(27-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

45.491

100

0.458
  comEC Vibrio parahaemolyticus RIMD 2210633

45.418

100

0.457
  comEC Vibrio cholerae strain A1552

43.484

100

0.437

Multiple sequence alignment