Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CEA93_RS12895 Genome accession   NZ_CP021980
Coordinates   2733984..2734616 (+) Length   210 a.a.
NCBI ID   WP_010318741.1    Uniprot ID   A0AAW8GZN2
Organism   Vibrio anguillarum strain 87-9-116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2728984..2739616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS12870 (CEA93_12870) - 2729058..2730977 (+) 1920 WP_013855909.1 ABC transporter ATP-binding protein -
  CEA93_RS12875 (CEA93_12875) - 2730979..2731458 (+) 480 WP_013855908.1 TIGR02444 family protein -
  CEA93_RS12880 (CEA93_12880) - 2731515..2732522 (+) 1008 WP_013855907.1 hydrolase -
  CEA93_RS12885 (CEA93_12885) - 2732584..2732790 (+) 207 WP_010318743.1 YheU family protein -
  CEA93_RS12890 (CEA93_12890) - 2732873..2733742 (+) 870 WP_010318742.1 phosphoribulokinase -
  CEA93_RS12895 (CEA93_12895) crp 2733984..2734616 (+) 633 WP_010318741.1 cAMP-activated global transcriptional regulator CRP Regulator
  CEA93_RS12900 (CEA93_12900) - 2734720..2735514 (-) 795 WP_013855906.1 DUF1338 domain-containing protein -
  CEA93_RS12905 (CEA93_12905) astD 2735583..2737040 (-) 1458 WP_013855905.1 succinylglutamate-semialdehyde dehydrogenase -
  CEA93_RS12910 (CEA93_12910) astA 2737072..2738091 (-) 1020 WP_029190038.1 arginine N-succinyltransferase -
  CEA93_RS12915 (CEA93_12915) - 2738158..2739368 (-) 1211 Protein_2441 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23663.44 Da        Isoelectric Point: 7.8388

>NTDB_id=235578 CEA93_RS12895 WP_010318741.1 2733984..2734616(+) (crp) [Vibrio anguillarum strain 87-9-116]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=235578 CEA93_RS12895 WP_010318741.1 2733984..2734616(+) (crp) [Vibrio anguillarum strain 87-9-116]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
ACGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGTCTACAAGTCACCAGTCAAAAAGTGGGTG
ATTTAGCCTTCCTAGACGTGACGGGTCGTATTGCACAAACGCTACTCAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAGATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment