Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6950_RS11630 Genome accession   NZ_CP027550
Coordinates   2200607..2201344 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2015C-4136CT1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2195607..2206344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6950_RS11615 clpC 2196061..2198634 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6950_RS11620 yfiH 2198764..2199495 (-) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  C6950_RS11625 rluD 2199492..2200472 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6950_RS11630 comL 2200607..2201344 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6950_RS11635 insG 2201448..2202794 (+) 1347 WP_024229439.1 IS4-like element IS4 family transposase -
  C6950_RS11645 raiA 2203055..2203396 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6950_RS11650 pheL 2203500..2203547 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6950_RS11655 pheA 2203646..2204806 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6950_RS11660 tyrA 2204849..2205970 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235568 C6950_RS11630 WP_000197686.1 2200607..2201344(+) (comL) [Escherichia coli strain 2015C-4136CT1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235568 C6950_RS11630 WP_000197686.1 2200607..2201344(+) (comL) [Escherichia coli strain 2015C-4136CT1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376