Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BJE04_RS03660 Genome accession   NC_005139
Coordinates   711502..712227 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus YJ016     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 706502..717227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS03635 (VV0707) trpR 707062..707370 (+) 309 WP_011078578.1 trp operon repressor -
  BJE04_RS03640 (VV0708) yjjX 707401..707937 (-) 537 WP_043877072.1 inosine/xanthosine triphosphatase -
  BJE04_RS03645 (VV0709) pheA 707962..709140 (-) 1179 WP_011078576.1 prephenate dehydratase -
  BJE04_RS03650 (VV0710) hpf 709384..709707 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BJE04_RS03655 (VV0711) - 710041..711378 (-) 1338 WP_011149570.1 IS4-like element ISVvu3 family transposase -
  BJE04_RS03660 (VV0712) comL 711502..712227 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  BJE04_RS03665 (VV0713) rluD 712364..713341 (+) 978 WP_011149571.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BJE04_RS03670 (VV0714) pgeF 713345..714061 (+) 717 WP_181392316.1 peptidoglycan editing factor PgeF -
  BJE04_RS03675 (VV0715) clpC 714179..716752 (+) 2574 WP_011149573.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=23555 BJE04_RS03660 WP_011078574.1 711502..712227(-) (comL) [Vibrio vulnificus YJ016]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=23555 BJE04_RS03660 WP_011078574.1 711502..712227(-) (comL) [Vibrio vulnificus YJ016]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment