Detailed information NTG0235470

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CEG11_RS01940
• Genome accession: NZ_CP021976
• Coordinates: 382073..383221 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain T20E-257
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 377073..388221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEG11_RS01920 (CEG11_01920)	-	377471..378154 (-)	684	WP_003156346.1	ABC transporter ATP-binding protein	-
CEG11_RS01925 (CEG11_01925)	-	378169..379605 (-)	1437	WP_003156344.1	ABC transporter permease	-
CEG11_RS01930 (CEG11_01930)	-	379818..380500 (+)	683	Protein_340	winged helix-turn-helix domain-containing protein	-
CEG11_RS01935 (CEG11_01935)	-	380487..381920 (+)	1434	WP_162130794.1	sensor histidine kinase	-
CEG11_RS01940 (CEG11_01940)	rapC	382073..383221 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
CEG11_RS01945 (CEG11_01945)	phrC	383205..383324 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CEG11_RS01950 (CEG11_01950)	-	383474..383584 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
CEG11_RS01955 (CEG11_01955)	-	383664..385028 (-)	1365	WP_003156333.1	aspartate kinase	-
CEG11_RS01965 (CEG11_01965)	ceuB	385443..386396 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
CEG11_RS01970 (CEG11_01970)	-	386386..387333 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
CEG11_RS01975 (CEG11_01975)	-	387327..388085 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=235470 CEG11_RS01940 WP_003156336.1 382073..383221(+) (rapC) [Bacillus velezensis strain T20E-257]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=235470 CEG11_RS01940 WP_003156336.1 382073..383221(+) (rapC) [Bacillus velezensis strain T20E-257]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568