Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6992_RS02075 Genome accession   NZ_CP027548
Coordinates   398204..398941 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-3061     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393204..403941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6992_RS02040 yfiL 393363..393728 (-) 366 WP_032314308.1 DUF2799 domain-containing protein -
  C6992_RS02045 aroF 393938..395008 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6992_RS02050 tyrA 395019..396140 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6992_RS02055 pheA 396183..397343 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6992_RS02060 pheL 397441..397488 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6992_RS02065 raiA 397592..397933 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6992_RS02075 comL 398204..398941 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6992_RS02080 rluD 399076..400056 (+) 981 WP_032314306.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6992_RS02085 yfiH 400053..400784 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6992_RS02090 clpC 400914..403487 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235472 C6992_RS02075 WP_000197686.1 398204..398941(-) (comL) [Escherichia coli strain 2014C-3061]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235472 C6992_RS02075 WP_000197686.1 398204..398941(-) (comL) [Escherichia coli strain 2014C-3061]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment