Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MJ68_RS09060 Genome accession   NZ_CP027544
Coordinates   1607196..1607933 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-3264     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602196..1612933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ68_RS09045 clpC 1602650..1605223 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MJ68_RS09050 yfiH 1605353..1606084 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  MJ68_RS09055 rluD 1606081..1607061 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MJ68_RS09060 comL 1607196..1607933 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MJ68_RS09070 raiA 1608204..1608545 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MJ68_RS09075 pheL 1608649..1608696 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MJ68_RS09080 pheA 1608795..1609955 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  MJ68_RS09085 tyrA 1609998..1611119 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MJ68_RS09090 aroF 1611130..1612200 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MJ68_RS09095 yfiL 1612410..1612775 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235318 MJ68_RS09060 WP_000197686.1 1607196..1607933(+) (comL) [Escherichia coli strain 2013C-3264]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235318 MJ68_RS09060 WP_000197686.1 1607196..1607933(+) (comL) [Escherichia coli strain 2013C-3264]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment