Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CD200_RS02010 Genome accession   NZ_CP021970
Coordinates   368727..369173 (-) Length   148 a.a.
NCBI ID   WP_003178810.1    Uniprot ID   A0A8B5YEZ5
Organism   Bacillus licheniformis strain CBA7132     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363727..374173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD200_RS01985 (CD200_01985) - 364334..365209 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  CD200_RS01990 (CD200_01990) - 365393..365944 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  CD200_RS01995 (CD200_01995) - 366041..366766 (+) 726 WP_003178804.1 AAA family ATPase -
  CD200_RS02000 (CD200_02000) - 366836..368272 (+) 1437 WP_003178806.1 family 1 glycosylhydrolase -
  CD200_RS02005 (CD200_02005) nin/comJ 368311..368709 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  CD200_RS02010 (CD200_02010) nucA/comI 368727..369173 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CD200_RS21900 - 369473..369643 (+) 171 WP_011197533.1 hypothetical protein -
  CD200_RS02015 (CD200_02015) - 369649..370452 (+) 804 WP_017473997.1 protein kinase -
  CD200_RS02020 (CD200_02020) - 370472..372081 (-) 1610 Protein_362 methyl-accepting chemotaxis protein -
  CD200_RS02025 (CD200_02025) - 372272..373012 (-) 741 WP_003178817.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16224.12 Da        Isoelectric Point: 4.9954

>NTDB_id=235317 CD200_RS02010 WP_003178810.1 368727..369173(-) (nucA/comI) [Bacillus licheniformis strain CBA7132]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=235317 CD200_RS02010 WP_003178810.1 368727..369173(-) (nucA/comI) [Bacillus licheniformis strain CBA7132]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment