Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AM474_RS03210 Genome accession   NZ_CP027538
Coordinates   619655..621631 (-) Length   658 a.a.
NCBI ID   WP_020924944.1    Uniprot ID   A0ABC8QFU4
Organism   Pseudomonas aeruginosa strain AR_0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 614655..626631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM474_RS03180 (AM474_03180) - 614813..615922 (-) 1110 WP_007182549.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  AM474_RS03185 (AM474_03185) frmR 615982..616257 (-) 276 WP_007182548.1 formaldehyde-responsive transcriptional repressor FrmR -
  AM474_RS03190 (AM474_03190) - 616540..617430 (-) 891 WP_007182547.1 carbon-nitrogen hydrolase family protein -
  AM474_RS03195 (AM474_03195) - 617427..618035 (-) 609 WP_007182546.1 GNAT family N-acetyltransferase -
  AM474_RS03200 (AM474_03200) - 618037..618444 (-) 408 WP_017514126.1 ketosteroid isomerase-related protein -
  AM474_RS03205 (AM474_03205) - 618599..619504 (+) 906 WP_020924945.1 LysR family transcriptional regulator -
  AM474_RS03210 (AM474_03210) uvrB 619655..621631 (-) 1977 WP_020924944.1 excinuclease ABC subunit UvrB Machinery gene
  AM474_RS03220 (AM474_03220) - 622125..623396 (+) 1272 WP_020924943.1 IS4-like element ISPa45 family transposase -
  AM474_RS03225 (AM474_03225) - 623654..624085 (-) 432 WP_023835768.1 DUF488 family protein -
  AM474_RS03230 (AM474_03230) - 624570..625511 (+) 942 WP_028698648.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74379.62 Da        Isoelectric Point: 5.1698

>NTDB_id=235100 AM474_RS03210 WP_020924944.1 619655..621631(-) (uvrB) [Pseudomonas aeruginosa strain AR_0095]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRVQGDVIDIFPADSEYRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEAIRLYERITHDVEMMREVGYCSGMENYSCYFSDRDAA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLIDYGFRLPSSKNNRPLNFDEFEKVKPQTIFVSATPGDY
ELRVSKGRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=235100 AM474_RS03210 WP_020924944.1 619655..621631(-) (uvrB) [Pseudomonas aeruginosa strain AR_0095]
ATGTCAACCGGTATGTTTATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTGTC
GGACATAGAAGAAGGTGCGACGCACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCTACGTTGATCTTGGCTCCTAACAAGACGTTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAACGCGGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAAATCTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGCCTGTCCACGACCAAATCCTTGATTGAGC
GTCGTGACGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGATCCAGATGCATACCGAGCGCTACAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTAATTCGTCGCTTGGCTTTGCTGCAATATGATCGCACGGAGCG
CACTCTCAAGCGTGCAACGTTCCGCGTCCAAGGTGATGTGATTGACATTTTCCCCGCTGATTCCGAGTACAGGGCGGTTC
GGGTGGAACTGTTGGATGACACTGTTGCGTCTGTCCAATGGATGGACCCTGTTACCGGCAAGACGTTGGGAGAGATAGAC
CATTATTTGGTTTCGCCAAAAACGCTTTTCGCGCCGCCCACGAACAAAATAGATTCTGCATCCAAAAAGATACTCGCTGA
TATGGAAGAGCGGGTTGCCGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAATCAGGCTGTACGAGCGGATCACGCATG
ACGTGGAAATGATGCGCGAGGTCGGCTATTGCTCGGGGATGGAGAATTATTCCTGCTACTTCAGCGACCGAGACGCAGCT
TCTCCTCCGATCACGTTGCTGGATTATTTGCCGAAAGACGGGCTGCTGTTCGTCGATGAATCTCATGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGACACGCTGATCGATTACGGGTTCCGTTTGCCTTCATCGAAGA
ACAACCGGCCATTGAACTTTGACGAGTTCGAGAAGGTCAAGCCTCAGACCATCTTTGTTTCCGCTACTCCGGGCGACTAC
GAGCTGAGGGTGTCGAAAGGCAGGGTTGTCGAACAGGTTATCAGGCCAACGGGACTGCTTGACCCCAAGGTTGAAGTGCG
GAAAGCGGATGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAGAAAGAATCGAGTGCTTGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCCATTCTCGATGCAGACCGTGCAGGGTTCTTGCGTTCGGCCC
ATGCGCTCATTCAGATGATCGGTCGAGTCGCTCGGAATGAAAACGGCAAGGCGATCTTGTACGCCGACGCGGTGACGCCG
GCGATGAAGCAGGCGATCGATGAGACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
AGCCTCGTCTGTGCGAAAACTAGCAGGGGAAGAGACGAATACGGAGGAGCCCACCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGACATTCGTCGTCAGTTGGATGGGTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(160-250)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

Type III restriction enzyme, res subunit (ResIII)

(17-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABC8QFU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae R6

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae D39

52.462

89.514

0.47

Multiple sequence alignment