Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S101392_RS19505 Genome accession   NZ_CP021921
Coordinates   3788396..3788515 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3783396..3793515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS19480 (S101392_03854) albG 3783559..3784260 (+) 702 WP_088327181.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  S101392_RS19485 (S101392_03855) ywhL 3784266..3785642 (-) 1377 WP_088327183.1 YncE family protein -
  S101392_RS19490 (S101392_03856) ywhK 3785682..3787037 (-) 1356 WP_088327185.1 YncE family protein -
  S101392_RS22055 - 3787034..3787264 (-) 231 WP_088327187.1 hypothetical protein -
  S101392_RS19500 (S101392_03857) rapF 3787267..3788412 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  S101392_RS19505 (S101392_03858) phrF 3788396..3788515 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  S101392_RS19510 (S101392_03859) - 3788742..3789218 (+) 477 WP_015384936.1 hypothetical protein -
  S101392_RS19515 (S101392_03860) - 3789466..3790164 (+) 699 WP_250621298.1 hypothetical protein -
  S101392_RS19530 (S101392_03863) - 3791640..3792287 (+) 648 WP_029318689.1 ABC transporter ATP-binding protein -
  S101392_RS19535 (S101392_03864) - 3792280..3792843 (+) 564 WP_015483840.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=234999 S101392_RS19505 WP_009968329.1 3788396..3788515(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=234999 S101392_RS19505 WP_009968329.1 3788396..3788515(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment