Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   S101392_RS19500 Genome accession   NZ_CP021921
Coordinates   3787267..3788412 (+) Length   381 a.a.
NCBI ID   WP_014481226.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3782267..3793412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS19475 (S101392_03853) albF 3782282..3783562 (+) 1281 WP_032722698.1 pitrilysin family protein -
  S101392_RS19480 (S101392_03854) albG 3783559..3784260 (+) 702 WP_088327181.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  S101392_RS19485 (S101392_03855) ywhL 3784266..3785642 (-) 1377 WP_088327183.1 YncE family protein -
  S101392_RS19490 (S101392_03856) ywhK 3785682..3787037 (-) 1356 WP_088327185.1 YncE family protein -
  S101392_RS22055 - 3787034..3787264 (-) 231 WP_088327187.1 hypothetical protein -
  S101392_RS19500 (S101392_03857) rapF 3787267..3788412 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  S101392_RS19505 (S101392_03858) phrF 3788396..3788515 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  S101392_RS19510 (S101392_03859) - 3788742..3789218 (+) 477 WP_015384936.1 hypothetical protein -
  S101392_RS19515 (S101392_03860) - 3789466..3790164 (+) 699 WP_250621298.1 hypothetical protein -
  S101392_RS19530 (S101392_03863) - 3791640..3792287 (+) 648 WP_029318689.1 ABC transporter ATP-binding protein -
  S101392_RS19535 (S101392_03864) - 3792280..3792843 (+) 564 WP_015483840.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45627.12 Da        Isoelectric Point: 5.1503

>NTDB_id=234998 S101392_RS19500 WP_014481226.1 3787267..3788412(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=234998 S101392_RS19500 WP_014481226.1 3787267..3788412(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCACATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment