Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   S101392_RS18440 Genome accession   NZ_CP021921
Coordinates   3571200..3571889 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566200..3576889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS18405 (S101392_03645) flgN 3566380..3566862 (-) 483 WP_003227999.1 flagellar protein FlgN -
  S101392_RS18410 (S101392_03646) flgM 3566878..3567144 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101392_RS18415 (S101392_03647) yvyF 3567225..3567644 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  S101392_RS18420 (S101392_03648) comFC 3567718..3568440 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  S101392_RS18425 (S101392_03649) comFB 3568404..3568700 (-) 297 WP_015483764.1 late competence protein ComFB -
  S101392_RS18430 (S101392_03650) comFA 3568760..3570151 (-) 1392 WP_088327075.1 ATP-dependent helicase ComFA Machinery gene
  S101392_RS18435 (S101392_03651) fakBA 3570257..3571102 (-) 846 WP_076457520.1 DegV family protein -
  S101392_RS18440 (S101392_03652) degU 3571200..3571889 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S101392_RS18445 (S101392_03653) degS 3571972..3573129 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  S101392_RS18450 (S101392_03654) yvyE 3573346..3573999 (+) 654 WP_003227979.1 YigZ family protein -
  S101392_RS18455 (S101392_03655) tagV 3573999..3575174 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  S101392_RS18460 (S101392_03656) tagO 3575247..3576323 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=234993 S101392_RS18440 WP_003219701.1 3571200..3571889(-) (degU) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=234993 S101392_RS18440 WP_003219701.1 3571200..3571889(-) (degU) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment