Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   S101392_RS18430 Genome accession   NZ_CP021921
Coordinates   3568760..3570151 (-) Length   463 a.a.
NCBI ID   WP_088327075.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563760..3575151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS18395 (S101392_03643) flgL 3563931..3564827 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  S101392_RS18400 (S101392_03644) flgK 3564838..3566361 (-) 1524 WP_088327073.1 flagellar hook-associated protein FlgK -
  S101392_RS18405 (S101392_03645) flgN 3566380..3566862 (-) 483 WP_003227999.1 flagellar protein FlgN -
  S101392_RS18410 (S101392_03646) flgM 3566878..3567144 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101392_RS18415 (S101392_03647) yvyF 3567225..3567644 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  S101392_RS18420 (S101392_03648) comFC 3567718..3568440 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  S101392_RS18425 (S101392_03649) comFB 3568404..3568700 (-) 297 WP_015483764.1 late competence protein ComFB -
  S101392_RS18430 (S101392_03650) comFA 3568760..3570151 (-) 1392 WP_088327075.1 ATP-dependent helicase ComFA Machinery gene
  S101392_RS18435 (S101392_03651) fakBA 3570257..3571102 (-) 846 WP_076457520.1 DegV family protein -
  S101392_RS18440 (S101392_03652) degU 3571200..3571889 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S101392_RS18445 (S101392_03653) degS 3571972..3573129 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  S101392_RS18450 (S101392_03654) yvyE 3573346..3573999 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52650.71 Da        Isoelectric Point: 9.9116

>NTDB_id=234992 S101392_RS18430 WP_088327075.1 3568760..3570151(-) (comFA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MNVPVEKNSSFSKELQRMLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKSLNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=234992 S101392_RS18430 WP_088327075.1 3568760..3570151(-) (comFA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCGGATGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCAGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGTACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAATCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987

Multiple sequence alignment