Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   S101392_RS12890 Genome accession   NZ_CP021921
Coordinates   2509206..2510276 (-) Length   356 a.a.
NCBI ID   WP_015714258.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504206..2515276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS12845 (S101392_02556) tapA 2504685..2505446 (-) 762 WP_088326478.1 amyloid fiber anchoring/assembly protein TapA -
  S101392_RS12850 (S101392_02557) yqzG 2505718..2506044 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  S101392_RS12855 (S101392_02558) spoIITA 2506086..2506265 (-) 180 WP_072175549.1 YqzE family protein -
  S101392_RS12860 (S101392_02559) comGG 2506336..2506710 (-) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  S101392_RS12865 comGF 2506711..2507094 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  S101392_RS12870 (S101392_02561) comGE 2507120..2507467 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  S101392_RS12875 (S101392_02562) comGD 2507451..2507882 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  S101392_RS12880 (S101392_02563) comGC 2507872..2508168 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  S101392_RS12885 (S101392_02564) comGB 2508182..2509219 (-) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  S101392_RS12890 (S101392_02565) comGA 2509206..2510276 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  S101392_RS12900 (S101392_02568) corA 2510688..2511641 (-) 954 WP_088326481.1 magnesium transporter CorA -
  S101392_RS12905 (S101392_02569) yqhB 2511784..2513112 (+) 1329 WP_029726716.1 hemolysin family protein -
  S101392_RS12910 (S101392_02570) rsbRD 2513165..2514001 (-) 837 WP_038429294.1 RsbT co-antagonist protein RsbRD -
  S101392_RS12920 (S101392_02572) mgsR 2514225..2514605 (-) 381 WP_014477337.1 transcriptional regulator MgsR -
  S101392_RS12925 (S101392_02573) yqgY 2514835..2515080 (+) 246 WP_038429295.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=234972 S101392_RS12890 WP_015714258.1 2509206..2510276(-) (comGA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=234972 S101392_RS12890 WP_015714258.1 2509206..2510276(-) (comGA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCACTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997

Multiple sequence alignment