Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AM467_RS08955 Genome accession   NZ_CP027530
Coordinates   1843122..1843757 (+) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0088     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838122..1848757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM467_RS08930 (AM467_08930) - 1838962..1839975 (+) 1014 WP_001096098.1 aminoglycoside phosphotransferase family protein -
  AM467_RS08935 (AM467_08935) murU 1839975..1840664 (+) 690 WP_000646455.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  AM467_RS08940 (AM467_08940) rsmG 1840752..1841384 (+) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AM467_RS08945 (AM467_08945) - 1841406..1842188 (+) 783 WP_000057212.1 ParA family protein -
  AM467_RS08950 (AM467_08950) - 1842185..1843072 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  AM467_RS08955 (AM467_08955) exbB 1843122..1843757 (+) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AM467_RS08960 (AM467_08960) - 1843773..1844201 (+) 429 WP_000669680.1 ExbD/TolR family protein -
  AM467_RS08965 (AM467_08965) msbA 1844198..1845925 (+) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  AM467_RS08970 (AM467_08970) lpxK 1845928..1846938 (+) 1011 WP_000050452.1 tetraacyldisaccharide 4'-kinase -
  AM467_RS08975 (AM467_08975) kdsB 1846948..1847709 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AM467_RS08980 (AM467_08980) - 1847721..1848701 (+) 981 WP_001075418.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=234965 AM467_RS08955 WP_000264042.1 1843122..1843757(+) (exbB) [Acinetobacter baumannii strain AR_0088]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=234965 AM467_RS08955 WP_000264042.1 1843122..1843757(+) (exbB) [Acinetobacter baumannii strain AR_0088]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment