Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   S101395_RS16430 Genome accession   NZ_CP021920
Coordinates   3125488..3126078 (-) Length   196 a.a.
NCBI ID   WP_006638375.1    Uniprot ID   -
Organism   Bacillus sonorensis strain SRCM101395     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120488..3131078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS16405 (S101395_03310) mobB 3120709..3121245 (-) 537 WP_006638370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  S101395_RS16410 (S101395_03311) glp 3121212..3122504 (-) 1293 WP_006638371.1 gephyrin-like molybdotransferase Glp -
  S101395_RS16415 (S101395_03312) - 3122523..3123536 (-) 1014 WP_006638372.1 MoeB/ThiF family adenylyltransferase -
  S101395_RS16420 (S101395_03313) mobA 3123655..3124242 (-) 588 WP_006638373.1 molybdenum cofactor guanylyltransferase -
  S101395_RS16425 (S101395_03314) - 3124396..3125352 (+) 957 WP_006638374.1 hypothetical protein -
  S101395_RS16430 (S101395_03315) rok 3125488..3126078 (-) 591 WP_006638375.1 transcriptional regulator Rok Regulator
  S101395_RS16435 (S101395_03316) - 3126625..3127083 (-) 459 WP_006638376.1 TlpA family protein disulfide reductase -
  S101395_RS16440 (S101395_03317) ahpA 3127172..3127714 (-) 543 WP_006638377.1 biofilm-specific peroxidase AhpA -
  S101395_RS16445 (S101395_03318) - 3128006..3128251 (-) 246 WP_006638378.1 YkuS family protein -
  S101395_RS16450 (S101395_03319) - 3128314..3129438 (-) 1125 WP_006638379.1 N-acetyldiaminopimelate deacetylase -
  S101395_RS16455 (S101395_03320) dapD 3129507..3130217 (-) 711 WP_006638380.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  S101395_RS16460 (S101395_03321) - 3130394..3130846 (-) 453 WP_006638381.1 flavodoxin -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22603.50 Da        Isoelectric Point: 9.9960

>NTDB_id=234900 S101395_RS16430 WP_006638375.1 3125488..3126078(-) (rok) [Bacillus sonorensis strain SRCM101395]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTDRKSESLPVLAELAAQEMKSYQQQ
QQQAQSSQKTQQQTSQQASVLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGDISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=234900 S101395_RS16430 WP_006638375.1 3125488..3126078(-) (rok) [Bacillus sonorensis strain SRCM101395]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGTTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
GATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAATGATACAAAAAAAGATT
TTCGCACAGACCGAAAAAGCGAATCACTTCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTACCAGCAGCAA
CAGCAGCAGGCGCAGTCATCTCAAAAAACTCAGCAGCAGACTTCTCAGCAAGCCTCTGTTCTGCCGGCCGGAATTCCAGA
CGGTACGACACGGCGCAGAAGAGGCACAGCACGTCCGGGTTCAAAAGCTGCAAAACTTCGTGAAGCGGCCATTAAAACGT
TGAAACGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAGATTGAAAAAGAAAGCGGACTTGAAATTCCTAAT
ATGACAACCTTCATGCAAAGCCTCATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGACATCTCTACTGAGACAGAACAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.675

97.449

0.796

Multiple sequence alignment