Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   CDO84_RS18290 Genome accession   NZ_CP021911
Coordinates   3617812..3617931 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus sp. MD-5     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3612812..3622931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS18265 (CDO84_18265) - 3612981..3613682 (+) 702 WP_040081520.1 hypothetical protein -
  CDO84_RS18270 (CDO84_18270) - 3613688..3615064 (-) 1377 WP_040081519.1 YncE family protein -
  CDO84_RS18275 (CDO84_18275) - 3615104..3616453 (-) 1350 WP_040081518.1 YncE family protein -
  CDO84_RS18285 (CDO84_18285) rapF 3616683..3617828 (+) 1146 WP_040081517.1 response regulator aspartate phosphatase RapF Regulator
  CDO84_RS18290 (CDO84_18290) phrF 3617812..3617931 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  CDO84_RS18295 (CDO84_18295) - 3618029..3618502 (+) 474 WP_040081516.1 YbaK/EbsC family protein -
  CDO84_RS18300 (CDO84_18300) speB 3618534..3619406 (-) 873 WP_003227545.1 agmatinase -
  CDO84_RS18305 (CDO84_18305) speE 3619467..3620297 (-) 831 WP_003227543.1 spermidine synthase -
  CDO84_RS18310 (CDO84_18310) - 3620499..3622574 (+) 2076 WP_040081515.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=234836 CDO84_RS18290 WP_003222023.1 3617812..3617931(+) (phrF) [Bacillus sp. MD-5]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=234836 CDO84_RS18290 WP_003222023.1 3617812..3617931(+) (phrF) [Bacillus sp. MD-5]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGTACTGTTTTCATCGCAACGAATATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment