Detailed information NTG0234835

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CDO84_RS18285
• Genome accession: NZ_CP021911
• Coordinates: 3616683..3617828 (+)
• Length: 381 a.a.
• NCBI ID: WP_040081517.1
• Uniprot ID: -
• Organism: Bacillus sp. MD-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3611683..3622828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDO84_RS18260 (CDO84_18260)	-	3611704..3612984 (+)	1281	WP_040081521.1	pitrilysin family protein	-
CDO84_RS18265 (CDO84_18265)	-	3612981..3613682 (+)	702	WP_040081520.1	hypothetical protein	-
CDO84_RS18270 (CDO84_18270)	-	3613688..3615064 (-)	1377	WP_040081519.1	YncE family protein	-
CDO84_RS18275 (CDO84_18275)	-	3615104..3616453 (-)	1350	WP_040081518.1	YncE family protein	-
CDO84_RS18285 (CDO84_18285)	rapF	3616683..3617828 (+)	1146	WP_040081517.1	response regulator aspartate phosphatase RapF	Regulator
CDO84_RS18290 (CDO84_18290)	phrF	3617812..3617931 (+)	120	WP_003222023.1	phosphatase RapF inhibitor PhrF	Regulator
CDO84_RS18295 (CDO84_18295)	-	3618029..3618502 (+)	474	WP_040081516.1	YbaK/EbsC family protein	-
CDO84_RS18300 (CDO84_18300)	speB	3618534..3619406 (-)	873	WP_003227545.1	agmatinase	-
CDO84_RS18305 (CDO84_18305)	speE	3619467..3620297 (-)	831	WP_003227543.1	spermidine synthase	-
CDO84_RS18310 (CDO84_18310)	-	3620499..3622574 (+)	2076	WP_040081515.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45666.02 Da
• Isoelectric Point: 5.1513

>NTDB_id=234835 CDO84_RS18285 WP_040081517.1 3616683..3617828(+) (rapF) [Bacillus sp. MD-5]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDHMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AVTYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGIAYSQEAGDSIYLSEFEFLKSLYLSGPDEEAI
QRFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=234835 CDO84_RS18285 WP_040081517.1 3616683..3617828(+) (rapF) [Bacillus sp. MD-5]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCATATGGAAGAAGACCAAGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCAAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTATGAACTGGACCAGCGGGAATATCTGTCTGCTATTAAATTTTTCAAGAAGGCTGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAGTCTTATTACTACATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCGTATAATATAAGGTTGCTTCAGTGTCACTCTTT
ATTTGCTACTAATTTCTTAGATCTGAAACAATATGAGGATGCCATATCACATTTTAAAAAAGCTTACTCTATGGCGGAAG
CTGAGAATCAGCCCCAATTGATGGGGAGAACCTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCGTAACATATTTCAAAAGAGCAATAGCTGTTTTTGAGGAATCTAATATTCTTCCTTCCCTGCCCCAAGCCTATTTTTT
GATTACACAAATTCATTATAAATTGGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATAGCTTATTCTCAAG
AGGCCGGGGATTCAATCTATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGGTTCTTTGATTTCCTCGAAAGTAAAATGTTGTATGCCGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCACGAACGTGAAAATTTTCAAAAAGCTTCTGCTTATTTCTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	95.801	100	0.958
rapC	Bacillus subtilis subsp. subtilis str. 168	57.895	99.738	0.577