Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CDO84_RS17240 Genome accession   NZ_CP021911
Coordinates   3403515..3404204 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. MD-5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3398515..3409204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS17205 (CDO84_17205) flgN 3398695..3399177 (-) 483 WP_014665556.1 flagellar protein FlgN -
  CDO84_RS17210 (CDO84_17210) flgM 3399192..3399458 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  CDO84_RS17215 (CDO84_17215) - 3399539..3399958 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  CDO84_RS17220 (CDO84_17220) comFC 3400032..3400754 (-) 723 WP_040081665.1 amidophosphoribosyltransferase Machinery gene
  CDO84_RS17225 (CDO84_17225) comFB 3400718..3401014 (-) 297 WP_014665560.1 late competence protein ComFB -
  CDO84_RS17230 (CDO84_17230) comFA 3401083..3402465 (-) 1383 WP_040081664.1 DEAD/DEAH box helicase Machinery gene
  CDO84_RS17235 (CDO84_17235) - 3402572..3403417 (-) 846 WP_040081663.1 DegV family protein -
  CDO84_RS17240 (CDO84_17240) degU 3403515..3404204 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CDO84_RS17245 (CDO84_17245) degS 3404287..3405444 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  CDO84_RS17250 (CDO84_17250) - 3405661..3406314 (+) 654 WP_014665564.1 YigZ family protein -
  CDO84_RS17255 (CDO84_17255) tagV 3406314..3407489 (+) 1176 WP_040081662.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  CDO84_RS17260 (CDO84_17260) - 3407561..3408637 (-) 1077 WP_014665566.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=234830 CDO84_RS17240 WP_003219701.1 3403515..3404204(-) (degU) [Bacillus sp. MD-5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=234830 CDO84_RS17240 WP_003219701.1 3403515..3404204(-) (degU) [Bacillus sp. MD-5]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment