Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CDO84_RS17230 Genome accession   NZ_CP021911
Coordinates   3401083..3402465 (-) Length   460 a.a.
NCBI ID   WP_040081664.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396083..3407465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS17195 (CDO84_17195) flgL 3396246..3397142 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  CDO84_RS17200 (CDO84_17200) flgK 3397153..3398676 (-) 1524 WP_040081666.1 flagellar hook-associated protein FlgK -
  CDO84_RS17205 (CDO84_17205) flgN 3398695..3399177 (-) 483 WP_014665556.1 flagellar protein FlgN -
  CDO84_RS17210 (CDO84_17210) flgM 3399192..3399458 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  CDO84_RS17215 (CDO84_17215) - 3399539..3399958 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  CDO84_RS17220 (CDO84_17220) comFC 3400032..3400754 (-) 723 WP_040081665.1 amidophosphoribosyltransferase Machinery gene
  CDO84_RS17225 (CDO84_17225) comFB 3400718..3401014 (-) 297 WP_014665560.1 late competence protein ComFB -
  CDO84_RS17230 (CDO84_17230) comFA 3401083..3402465 (-) 1383 WP_040081664.1 DEAD/DEAH box helicase Machinery gene
  CDO84_RS17235 (CDO84_17235) - 3402572..3403417 (-) 846 WP_040081663.1 DegV family protein -
  CDO84_RS17240 (CDO84_17240) degU 3403515..3404204 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CDO84_RS17245 (CDO84_17245) degS 3404287..3405444 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  CDO84_RS17250 (CDO84_17250) - 3405661..3406314 (+) 654 WP_014665564.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52290.34 Da        Isoelectric Point: 10.1287

>NTDB_id=234829 CDO84_RS17230 WP_040081664.1 3401083..3402465(-) (comFA) [Bacillus sp. MD-5]
MKVPTEKHISFSRELQQTLQSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDKWYFSFYHSFGKD
QLYCRSCVMMGRVSEEVPLYSWKDGDKQNWKSVKLIWDGKLSSGQQKAANILIEAISKREELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKARNGQLHSVRIPARHHRQPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGTPVFLFVPSVSILEKAAASFKDVNCRTATVHAEDKHRKEKVQRFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALIQIAGRTGRHKEHADGDVIFFHYGKTKSMLDAKKHIKEMNGLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=234829 CDO84_RS17230 WP_040081664.1 3401083..3402465(-) (comFA) [Bacillus sp. MD-5]
GTGAAGGTGCCAACTGAAAAGCACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGCTATATCACCGCTGAAAATTCTATATCAATAA
ATAAACGGGGCTATAGATGTAATAGGTGCGGCCAAACTGATAAGTGGTATTTTTCTTTTTATCACTCATTTGGAAAAGAT
CAGCTGTATTGCCGTTCCTGTGTCATGATGGGTAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGATGGAGATAA
ACAAAACTGGAAGTCTGTTAAGCTGATATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATATTTTAATTG
AAGCAATATCAAAAAGAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTATTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACTCCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTCATGA
TTTCCACCACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTTATGATCGTTGATGAGGTTGACGCTTTTCCGTAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCGCGGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGCAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGACGCCTGTTTTTTTATTCGTTCCCTCCGTTTCTATTCTAGAAAAGGCTGCTGC
GAGCTTTAAAGATGTTAATTGCCGAACCGCGACGGTGCATGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCGATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTTACGGTTCCCAAGGTGCAAACAGGTGTA
CTAGGAGCGGAATCTCCTATCTTTACGGAAAGCGCACTTATTCAAATCGCAGGAAGAACTGGCCGGCATAAAGAGCATGC
AGACGGCGATGTCATTTTCTTTCACTATGGCAAAACAAAGAGTATGCTCGATGCAAAAAAGCATATAAAAGAAATGAACG
GCTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

91.304

100

0.913

Multiple sequence alignment