Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   CDO84_RS15200 Genome accession   NZ_CP021911
Coordinates   2992005..2994302 (-) Length   765 a.a.
NCBI ID   WP_040081968.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 2987005..2999302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS15160 (CDO84_15160) - 2987472..2987903 (+) 432 WP_014665185.1 Na(+)/H(+) antiporter subunit B -
  CDO84_RS15165 (CDO84_15165) - 2987903..2988244 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  CDO84_RS15170 (CDO84_15170) - 2988237..2989718 (+) 1482 WP_040081971.1 Na+/H+ antiporter subunit D -
  CDO84_RS15175 (CDO84_15175) - 2989724..2990200 (+) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  CDO84_RS15180 (CDO84_15180) - 2990200..2990484 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CDO84_RS15185 (CDO84_15185) mnhG 2990468..2990842 (+) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  CDO84_RS15190 (CDO84_15190) - 2990881..2991261 (-) 381 WP_040081970.1 hotdog fold thioesterase -
  CDO84_RS15195 (CDO84_15195) comA 2991280..2991924 (-) 645 WP_088299198.1 two-component system response regulator ComA Regulator
  CDO84_RS15200 (CDO84_15200) comP 2992005..2994302 (-) 2298 WP_040081968.1 histidine kinase Regulator
  CDO84_RS15205 (CDO84_15205) comX 2994310..2994471 (-) 162 WP_003241045.1 competence pheromone ComX -
  CDO84_RS15210 (CDO84_15210) - 2994486..2995346 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  CDO84_RS15215 (CDO84_15215) degQ 2995531..2995671 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  CDO84_RS21470 - 2995893..2996018 (+) 126 WP_128422565.1 hypothetical protein -
  CDO84_RS15220 (CDO84_15220) - 2996133..2996501 (+) 369 WP_014665193.1 hypothetical protein -
  CDO84_RS15225 (CDO84_15225) pdeH 2996477..2997706 (-) 1230 WP_014665194.1 cyclic di-GMP phosphodiesterase -

Sequence


Protein


Download         Length: 765 a.a.        Molecular weight: 88388.87 Da        Isoelectric Point: 8.0515

>NTDB_id=234823 CDO84_RS15200 WP_040081968.1 2992005..2994302(-) (comP) [Bacillus sp. MD-5]
MKSRTNKISVLLVVISLLYVIYLTYISNNNLLVGATVSKGKNGDVVITNVDEYSMASYSGIEKGDIVKRINNQKINTKEI
KMNKLKNVSSMVVERNGKDVELKLTLFNDKNFSTYLIPLMFYIVCLFCCLFIIKINESKDLPSALVLIIFLLSASIAYIS
AGVSVKGDILCRCIMVVTLISVPLNYLLFLYHYFRELGTTLFDKKVFILYLVPIINVVCEMFRSHLFFRDYVPKLSLLSF
FFLFIIVGIYFCIILIKNKDTEQAHIIKVLTIINIFSFSPFLCLYLIPYVFLNAHYVSSFLAASFMMLIPFSLVFQFMTN
KIYNVDFILSRLRYYGFLALTPTIILISTIELISSPDSDFYSVKLTFLIYIIMLAVFYYKEVLDFRFRLKRVSEKFNYQD
SIYKFTQMIRDSTSLSQVFEELKNTILEVSLVSRAHVYEVSADGNIKLYDDANVNSIEKVYQKEFRKVTSEIGKIVEFNK
GFVMKIGERGGKSFVMLCLSKMNTPRLTLEELSWLKTLAFYTNVSIENVMKIEELMSHLEEIKQQESNPVWLKKLMYTIE
EKQRSDLARDLHDSVLQDLISLKRQCELFLGDFKKDDNPCREEVQDKLVQMNEQMSDVISMTRETCHELRPQLLYDLGLV
KALSKLVAQQQERVPFHIRLNTGRFTASLDLDSQLNLYRIIQEFLSNAVKHSQATDVLIMLISIQNKIVLHYEDDGVGFD
LEKNTEHSMSMGLSGIKERVRALDGRLRIETSEGKGFKADIEIEL

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=234823 CDO84_RS15200 WP_040081968.1 2992005..2994302(-) (comP) [Bacillus sp. MD-5]
ATGAAGTCTAGAACCAATAAAATTTCTGTATTGTTAGTTGTAATAAGTCTGTTATATGTTATTTATTTGACCTATATAAG
CAATAATAATTTGTTAGTTGGAGCAACTGTTTCGAAAGGGAAGAACGGAGACGTTGTAATTACCAATGTAGATGAATATT
CAATGGCATCATACAGCGGAATAGAAAAAGGGGATATCGTAAAGCGTATTAATAATCAAAAGATAAACACTAAAGAAATA
AAAATGAATAAGCTTAAAAATGTGAGCTCAATGGTTGTTGAGAGAAATGGCAAGGATGTTGAGCTAAAGCTGACTTTATT
TAATGATAAAAATTTTTCTACTTACTTAATACCGTTAATGTTTTATATTGTTTGTTTATTTTGTTGCCTATTTATAATAA
AAATAAATGAATCAAAGGATTTACCATCTGCTTTAGTTTTAATTATATTTCTGTTATCGGCTTCTATTGCTTATATAAGC
GCAGGAGTTTCTGTTAAAGGCGATATACTATGCAGATGTATTATGGTGGTAACATTAATATCTGTACCGCTAAACTACCT
TCTCTTTCTTTATCATTATTTTAGAGAGTTAGGCACTACCTTATTTGATAAAAAAGTTTTCATTTTATATTTGGTACCGA
TCATAAATGTAGTGTGTGAAATGTTTCGTTCACATCTTTTCTTTCGTGATTATGTGCCTAAATTAAGTTTACTATCCTTT
TTCTTTTTATTTATCATAGTAGGGATATATTTCTGTATCATTTTAATTAAAAATAAAGATACTGAACAAGCGCATATTAT
TAAAGTTCTCACTATTATTAATATCTTTTCTTTCTCACCTTTTTTGTGTTTATATTTGATACCTTATGTCTTTTTAAATG
CGCACTATGTTTCATCCTTTTTAGCAGCTTCATTTATGATGCTAATACCTTTCTCCTTAGTATTTCAATTCATGACAAAT
AAAATCTATAATGTGGATTTTATTTTAAGCAGATTAAGGTACTATGGCTTTTTAGCTCTAACGCCAACAATTATTCTAAT
CTCTACAATTGAATTAATTAGTAGTCCTGATAGTGATTTTTATAGTGTTAAACTAACCTTTTTAATTTATATTATCATGT
TGGCGGTCTTTTATTATAAAGAAGTACTTGATTTCAGATTTAGATTAAAAAGGGTCTCAGAAAAATTCAATTATCAAGAC
AGTATATATAAATTCACGCAGATGATAAGAGACTCTACTTCCCTATCTCAAGTATTTGAAGAACTGAAAAATACTATACT
TGAGGTTTCTCTTGTTAGCCGAGCACATGTATATGAAGTTTCAGCTGACGGAAATATTAAACTATATGATGATGCGAACG
TAAATTCAATTGAAAAAGTCTATCAAAAAGAATTTAGAAAAGTAACATCCGAAATAGGGAAAATCGTTGAATTTAATAAA
GGTTTTGTCATGAAGATAGGTGAACGCGGTGGGAAATCATTTGTAATGCTTTGTTTATCTAAAATGAATACGCCCCGTCT
TACACTTGAAGAACTTTCTTGGCTGAAAACATTGGCTTTTTATACAAACGTATCGATCGAAAACGTCATGAAAATTGAAG
AACTGATGAGTCATTTAGAAGAAATAAAACAACAAGAATCCAACCCCGTATGGCTCAAAAAACTCATGTACACGATCGAG
GAAAAACAACGCTCCGATCTCGCCCGCGATCTCCACGATTCGGTTCTTCAGGACTTGATTTCCTTAAAACGCCAGTGTGA
GCTGTTTTTGGGTGATTTTAAAAAGGATGACAATCCGTGCCGTGAAGAAGTGCAGGACAAGCTTGTACAGATGAATGAGC
AGATGTCAGATGTGATTTCGATGACGAGGGAGACGTGTCATGAGCTGAGACCGCAGCTTCTGTATGATCTTGGATTGGTG
AAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCAGGAGCGGGTTCCATTTCATATCCGTTTAAATACCGGCAGATTTACGGC
TTCCCTTGATCTGGATTCGCAGCTGAATTTATACCGGATCATTCAAGAGTTTCTGTCTAATGCGGTCAAGCACTCTCAGG
CGACGGATGTGCTGATTATGCTCATCAGTATACAAAACAAAATTGTTCTTCATTATGAGGACGATGGCGTAGGGTTTGAC
CTAGAAAAAAATACTGAACATTCCATGAGCATGGGGCTTTCTGGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCT
TCGGATTGAAACGAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

59.197

100

0.597


Multiple sequence alignment