Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CDO84_RS15195 Genome accession   NZ_CP021911
Coordinates   2991280..2991924 (-) Length   214 a.a.
NCBI ID   WP_088299198.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986280..2996924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS15160 (CDO84_15160) - 2987472..2987903 (+) 432 WP_014665185.1 Na(+)/H(+) antiporter subunit B -
  CDO84_RS15165 (CDO84_15165) - 2987903..2988244 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  CDO84_RS15170 (CDO84_15170) - 2988237..2989718 (+) 1482 WP_040081971.1 Na+/H+ antiporter subunit D -
  CDO84_RS15175 (CDO84_15175) - 2989724..2990200 (+) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  CDO84_RS15180 (CDO84_15180) - 2990200..2990484 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CDO84_RS15185 (CDO84_15185) mnhG 2990468..2990842 (+) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  CDO84_RS15190 (CDO84_15190) - 2990881..2991261 (-) 381 WP_040081970.1 hotdog fold thioesterase -
  CDO84_RS15195 (CDO84_15195) comA 2991280..2991924 (-) 645 WP_088299198.1 two-component system response regulator ComA Regulator
  CDO84_RS15200 (CDO84_15200) comP 2992005..2994302 (-) 2298 WP_040081968.1 histidine kinase Regulator
  CDO84_RS15205 (CDO84_15205) comX 2994310..2994471 (-) 162 WP_003241045.1 competence pheromone ComX -
  CDO84_RS15210 (CDO84_15210) - 2994486..2995346 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  CDO84_RS15215 (CDO84_15215) degQ 2995531..2995671 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  CDO84_RS21470 - 2995893..2996018 (+) 126 WP_128422565.1 hypothetical protein -
  CDO84_RS15220 (CDO84_15220) - 2996133..2996501 (+) 369 WP_014665193.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24158.53 Da        Isoelectric Point: 4.6043

>NTDB_id=234822 CDO84_RS15195 WP_088299198.1 2991280..2991924(-) (comA) [Bacillus sp. MD-5]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKWSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=234822 CDO84_RS15195 WP_088299198.1 2991280..2991924(-) (comA) [Bacillus sp. MD-5]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCACTTGAGCAAGTGGTCCATTGAATA
CAGCCTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(152-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment