Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CDO84_RS01165 Genome accession   NZ_CP021911
Coordinates   262056..263006 (+) Length   316 a.a.
NCBI ID   WP_040084171.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257056..268006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS01140 (CDO84_01140) yclK 257118..258539 (+) 1422 WP_082033070.1 two-component system sensor histidine kinase YclK -
  CDO84_RS01145 (CDO84_01145) rapC 258702..259850 (+) 1149 WP_014662770.1 response regulator aspartate phosphatase RapC Regulator
  CDO84_RS01150 (CDO84_01150) phrC 259834..259956 (+) 123 WP_014662771.1 phosphatase RapC inhibitor PhrC Regulator
  CDO84_RS01155 (CDO84_01155) - 260054..260164 (-) 111 WP_040084173.1 YjcZ family sporulation protein -
  CDO84_RS01160 (CDO84_01160) - 260307..261671 (-) 1365 WP_014662772.1 aspartate kinase -
  CDO84_RS01165 (CDO84_01165) ceuB 262056..263006 (+) 951 WP_040084171.1 petrobactin ABC transporter permease YclN Machinery gene
  CDO84_RS01170 (CDO84_01170) yclO 262999..263946 (+) 948 WP_040084169.1 petrobactin ABC transporter permease YclO -
  CDO84_RS01175 (CDO84_01175) yclP 263940..264698 (+) 759 WP_040084168.1 petrobactin ABC transporter ATP-binding protein YclP -
  CDO84_RS01180 (CDO84_01180) yclQ 264720..265673 (+) 954 WP_040084167.1 petrobactin ABC transporter substrate-binding protein YclQ -
  CDO84_RS01185 (CDO84_01185) - 265721..267139 (-) 1419 WP_014662777.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34871.27 Da        Isoelectric Point: 9.9364

>NTDB_id=234770 CDO84_RS01165 WP_040084171.1 262056..263006(+) (ceuB) [Bacillus sp. MD-5]
MKLRYLFILLIILAITSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=234770 CDO84_RS01165 WP_040084171.1 262056..263006(+) (ceuB) [Bacillus sp. MD-5]
ATGAAGCTACGTTATTTATTTATTCTACTTATCATATTAGCCATCACATCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTAATCAGCATTGTCA
TCGCGGGCTTAAGCATGAGCATCTGCGGCTTGATTATGCAGCAGATCAGCAGAAACAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCTCGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTAGCAGGCAACTTCCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACTTTTATCGCGTATAAATATGACTTGATC
CAGAACGTGTCATCATGGCTTCAGGGAGACTTCTCCTTAGTCGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGAGAAAGCTTTTCTGTCAATCTCGGCC
TAAAATACAAGCGGGTAGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTATTGGGAGCGGTTTTTGTGCTGTTTTGCGATATATTGGGCAGAGTTATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment